Variant report

Variant	rs752946
Chromosome Location	chr13:110469401-110469402
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs170860	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs336229	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs336230	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs336231	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs336246	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs336247	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs4238270	0.83[ASN][1000 genomes]
rs9521523	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv826789	chr13:110387268-110473524	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:110465600-110469600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr13:110465600-110469800	Weak transcription	Fetal Muscle Trunk	muscle
3	chr13:110468200-110469600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr13:110468200-110469800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr13:110468200-110470400	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr13:110468200-110470400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr13:110468200-110471000	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr13:110468400-110469600	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr13:110468400-110469600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr13:110468400-110470200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr13:110468400-110470400	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr13:110468400-110471200	Enhancers	HMEC	breast
13	chr13:110468600-110470000	Enhancers	H1 Cell Line	embryonic stem cell
14	chr13:110468600-110470000	Enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr13:110468600-110470400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr13:110468600-110471200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr13:110468800-110469600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
18	chr13:110468800-110469600	Enhancers	HUES6 Cell Line	embryonic stem cell
19	chr13:110468800-110469600	Enhancers	Adipose Nuclei	Adipose
20	chr13:110468800-110469800	Enhancers	iPS-15b Cell Line	embryonic stem cell
21	chr13:110468800-110470000	Enhancers	HUES64 Cell Line	embryonic stem cell
22	chr13:110468800-110470200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr13:110468800-110470200	Enhancers	HSMMtube	muscle
24	chr13:110468800-110470400	Enhancers	iPS-20b Cell Line	embryonic stem cell
25	chr13:110468800-110471200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr13:110468800-110471200	Enhancers	NH-A	brain
27	chr13:110468800-110471400	Enhancers	NHEK	skin
28	chr13:110468800-110471600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr13:110469000-110470000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
30	chr13:110469000-110470200	Weak transcription	H9 Cell Line	embryonic stem cell
31	chr13:110469000-110470200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr13:110469200-110469600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr13:110469200-110470000	Enhancers	Pancreas	Pancrea
34	chr13:110469200-110470200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
35	chr13:110469200-110470200	Enhancers	Liver	Liver
36	chr13:110469200-110470200	Weak transcription	Dnd41	blood
37	chr13:110469200-110470600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr13:110469400-110470400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr13:110469400-110471000	Flanking Active TSS	HSMM	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links