Variant report

Variant	rs336231
Chromosome Location	chr13:110470332-110470333
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs170860	0.82[ASN][1000 genomes]
rs336229	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs336230	0.88[EUR][1000 genomes]
rs4238270	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4771653	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs752946	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9521523	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv826789	chr13:110387268-110473524	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:110468200-110470400	Enhancers	ES-I3 Cell Line	embryonic stem cell
2	chr13:110468200-110470400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr13:110468200-110471000	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr13:110468400-110470400	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr13:110468400-110471200	Enhancers	HMEC	breast
6	chr13:110468600-110470400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr13:110468600-110471200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr13:110468800-110470400	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr13:110468800-110471200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr13:110468800-110471200	Enhancers	NH-A	brain
11	chr13:110468800-110471400	Enhancers	NHEK	skin
12	chr13:110468800-110471600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr13:110469200-110470600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr13:110469400-110470400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr13:110469400-110471000	Flanking Active TSS	HSMM	muscle
16	chr13:110469600-110470600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
17	chr13:110469600-110471200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr13:110469600-110471200	Enhancers	NHDF-Ad	bronchial
19	chr13:110469800-110471200	Enhancers	Fetal Muscle Trunk	muscle
20	chr13:110470000-110470800	Weak transcription	Pancreas	Pancrea
21	chr13:110470000-110471000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr13:110470000-110471600	Enhancers	Fetal Muscle Leg	muscle
23	chr13:110470000-110473000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr13:110470200-110470600	Enhancers	Muscle Satellite Cultured Cells	--
25	chr13:110470200-110470600	Flanking Active TSS	HSMMtube	muscle
26	chr13:110470200-110471600	Enhancers	Dnd41	blood
27	chr13:110470200-110473400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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