Variant report

Variant	rs336550
Chromosome Location	chr3:161112867-161112868
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs163137	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs336560	0.91[AMR][1000 genomes]
rs420081	0.88[AMR][1000 genomes]
rs456882	1.00[EUR][1000 genomes]
rs457240	0.88[AMR][1000 genomes]
rs458175	1.00[EUR][1000 genomes]
rs459679	0.86[AMR][1000 genomes]
rs460950	1.00[EUR][1000 genomes]
rs463630	1.00[EUR][1000 genomes]
rs463890	1.00[EUR][1000 genomes]
rs466971	1.00[EUR][1000 genomes]
rs467458	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931072	chr3:160669567-161159779	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
2	nsv533237	chr3:161019834-161804660	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	91 gene(s)	inside rSNPs	diseases
3	nsv829772	chr3:161047817-161202554	Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	88 gene(s)	inside rSNPs	diseases
4	nsv877710	chr3:161087857-161245414	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	84 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:161108800-161114400	Enhancers	Primary T helper cells PMA-I stimulated	--
2	chr3:161110000-161114600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
3	chr3:161110200-161113200	Enhancers	Stomach Mucosa	stomach
4	chr3:161110200-161114400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
5	chr3:161110200-161114600	Enhancers	Primary T helper cells fromperipheralblood	blood
6	chr3:161110800-161113600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
7	chr3:161111200-161113400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
8	chr3:161111400-161113200	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr3:161111400-161113600	Enhancers	Monocytes-CD14+_RO01746	blood
10	chr3:161111600-161113200	Weak transcription	Liver	Liver
11	chr3:161111600-161113600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
12	chr3:161111600-161113600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr3:161111800-161113800	Enhancers	Primary monocytes fromperipheralblood	blood
14	chr3:161111800-161113800	Enhancers	Primary T cells fromperipheralblood	blood
15	chr3:161112000-161113200	Bivalent Enhancer	HepG2	liver
16	chr3:161112000-161113600	Enhancers	Fetal Thymus	thymus
17	chr3:161112000-161113800	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
18	chr3:161112000-161113800	Enhancers	Dnd41	blood
19	chr3:161112200-161113200	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
20	chr3:161112200-161113600	Enhancers	Thymus	Thymus
21	chr3:161112400-161113400	Weak transcription	Fetal Lung	lung
22	chr3:161112400-161113400	Enhancers	Sigmoid Colon	Sigmoid Colon
23	chr3:161112600-161113000	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
24	chr3:161112600-161113400	Flanking Active TSS	Primary T cells from cord blood	blood
25	chr3:161112600-161113400	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
26	chr3:161112800-161113000	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
27	chr3:161112800-161113600	Enhancers	Primary neutrophils fromperipheralblood	blood

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