Variant report

Variant	rs458175
Chromosome Location	chr3:161102851-161102852
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:161097507..161100487-chr3:161101328..161104049,2	K562	blood:
2	chr3:160344731..160346992-chr3:161101711..161103995,2	MCF-7	breast:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs11710086	0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs11710916	0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs11713185	0.85[ASN][1000 genomes]
rs1349352	0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs163137	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs16832246	0.85[ASN][1000 genomes]
rs16832279	0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs1811483	0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs1839491	0.82[ASN][1000 genomes]
rs2061804	0.94[ASN][1000 genomes]
rs2404341	0.80[JPT][hapmap]
rs2404342	0.81[JPT][hapmap]
rs336550	1.00[EUR][1000 genomes]
rs34727114	0.80[ASN][1000 genomes]
rs374501	0.94[AMR][1000 genomes]
rs393076	0.94[AMR][1000 genomes]
rs404725	0.95[JPT][hapmap]
rs456137	0.96[AMR][1000 genomes]
rs456331	0.96[AMR][1000 genomes]
rs456882	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs458344	0.96[AMR][1000 genomes]
rs459565	0.96[AMR][1000 genomes]
rs459592	0.95[AMR][1000 genomes]
rs459923	0.96[AMR][1000 genomes]
rs460013	0.96[AMR][1000 genomes]
rs460176	0.96[AMR][1000 genomes]
rs460950	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs460957	0.94[AMR][1000 genomes]
rs460987	0.96[AMR][1000 genomes]
rs463630	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs463890	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs465539	0.96[AMR][1000 genomes]
rs465964	0.96[AMR][1000 genomes]
rs466119	0.96[AMR][1000 genomes]
rs466971	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs467353	0.96[AMR][1000 genomes]
rs467458	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs67077657	0.80[ASN][1000 genomes]
rs73021449	0.83[ASN][1000 genomes]
rs7627320	0.90[JPT][hapmap]
rs9816665	0.90[JPT][hapmap]
rs9836881	0.90[JPT][hapmap]
rs9836887	0.90[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931072	chr3:160669567-161159779	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
2	nsv533237	chr3:161019834-161804660	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	91 gene(s)	inside rSNPs	diseases
3	nsv829772	chr3:161047817-161202554	Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	88 gene(s)	inside rSNPs	diseases
4	nsv877710	chr3:161087857-161245414	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	84 gene(s)	inside rSNPs	diseases
5	nsv518101	chr3:161102097-161102861	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:161102800-161106200	Enhancers	Pancreatic Islets	Pancreatic Islet

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