Variant report

Variant	rs9816665
Chromosome Location	chr3:161206391-161206392
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:161088676..161090496-chr3:161206287..161209014,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000196542	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1117344	0.83[ASN][1000 genomes]
rs11710086	0.90[JPT][hapmap]
rs11710916	0.90[JPT][hapmap]
rs12632883	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12633334	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1349352	0.90[JPT][hapmap]
rs1395294	0.91[EUR][1000 genomes]
rs1450524	0.91[CHB][hapmap];0.86[CHD][hapmap];0.86[MEX][hapmap];0.83[TSI][hapmap]
rs1450531	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1450532	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1463946	1.00[CEU][hapmap]
rs1506471	0.86[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs1546395	0.90[EUR][1000 genomes]
rs1567061	0.91[EUR][1000 genomes]
rs16832279	0.90[JPT][hapmap]
rs1811483	0.90[JPT][hapmap]
rs1848041	0.90[EUR][1000 genomes]
rs34436128	0.83[ASN][1000 genomes]
rs3921595	0.85[CEU][hapmap]
rs404725	0.90[JPT][hapmap]
rs4599324	0.84[ASN][1000 genomes]
rs4615094	0.92[CEU][hapmap];0.91[EUR][1000 genomes]
rs7625210	0.91[CHB][hapmap];0.89[CHD][hapmap];0.86[MEX][hapmap];0.83[TSI][hapmap];0.83[ASN][1000 genomes]
rs7627320	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7641731	0.91[EUR][1000 genomes]
rs7642359	0.81[EUR][1000 genomes]
rs9290084	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9822904	0.91[EUR][1000 genomes]
rs9835278	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9835582	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9836881	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9836887	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9837148	0.83[ASN][1000 genomes]
rs9854937	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9858921	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533237	chr3:161019834-161804660	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	91 gene(s)	inside rSNPs	diseases
2	nsv877710	chr3:161087857-161245414	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	84 gene(s)	inside rSNPs	diseases
3	nsv829773	chr3:161150422-161315189	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:161205000-161206400	Enhancers	Monocytes-CD14+_RO01746	blood
2	chr3:161205800-161210000	Enhancers	Primary monocytes fromperipheralblood	blood

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