Variant report

Variant	rs12633334
Chromosome Location	chr3:161170611-161170612
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:161157860..161160581-chr3:161168208..161171597,3	MCF-7	breast:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1117344	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11710086	0.90[JPT][hapmap]
rs11710916	0.90[JPT][hapmap]
rs12632883	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1349352	0.90[JPT][hapmap]
rs1450524	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[GIH][hapmap];0.85[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap]
rs1450531	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1450532	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1597494	0.81[AMR][1000 genomes]
rs16832279	0.90[JPT][hapmap]
rs1811483	0.90[JPT][hapmap]
rs1905533	0.92[CEU][hapmap];0.91[EUR][1000 genomes]
rs34436128	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs404725	0.90[JPT][hapmap]
rs4599324	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6762110	0.80[AMR][1000 genomes]
rs7625210	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[GIH][hapmap];0.85[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7627320	1.00[CHB][hapmap];0.90[JPT][hapmap];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7633191	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7651540	0.92[CEU][hapmap];0.81[MEX][hapmap];0.93[TSI][hapmap];0.93[EUR][1000 genomes]
rs9290084	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs971515	0.92[CEU][hapmap];0.91[EUR][1000 genomes]
rs9816665	1.00[CHB][hapmap];0.90[JPT][hapmap];0.83[TSI][hapmap];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9835278	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9835582	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9836881	1.00[CHB][hapmap];0.90[JPT][hapmap];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9836887	1.00[CHB][hapmap];0.90[JPT][hapmap];0.83[TSI][hapmap];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9837148	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9854937	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9858921	0.92[CEU][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533237	chr3:161019834-161804660	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	91 gene(s)	inside rSNPs	diseases
2	nsv829772	chr3:161047817-161202554	Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	88 gene(s)	inside rSNPs	diseases
3	nsv877710	chr3:161087857-161245414	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	84 gene(s)	inside rSNPs	diseases
4	nsv829773	chr3:161150422-161315189	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv967084	chr3:161163639-161183247	Enhancers Bivalent/Poised TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:161170400-161171800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr3:161170400-161171800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr3:161170600-161172000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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