Variant report

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:161136644..161139076-chr3:161160623..161163367,2	MCF-7	breast:
2	chr3:161124593..161126837-chr3:161161985..161163633,2	MCF-7	breast:
3	chr3:161159586..161162271-chr3:161162430..161165084,3	MCF-7	breast:
4	chr3:161087867..161091778-chr3:161159434..161163634,9	MCF-7	breast:
5	chr3:161153934..161156092-chr3:161162530..161165225,2	MCF-7	breast:
6	chr3:161161602..161163726-chr3:161192340..161193989,2	MCF-7	breast:
7	chr3:161088423..161092396-chr3:161159740..161164169,5	MCF-7	breast:
8	chr3:161156686..161159483-chr3:161160092..161163012,3	MCF-7	breast:
9	chr3:161137896..161142184-chr3:161162436..161166379,4	MCF-7	breast:
10	chr3:161161864..161163648-chr3:161163998..161165965,2	MCF-7	breast:
11	chr3:161145758..161147913-chr3:161160739..161163339,2	MCF-7	breast:

No data

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10936229	0.81[CEU][hapmap]
rs12633334	0.80[AMR][1000 genomes]
rs13433795	0.81[CEU][hapmap]
rs1506480	0.80[CEU][hapmap]
rs1506481	0.81[CEU][hapmap]
rs1597494	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1601199	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1905532	0.83[CEU][hapmap]
rs1905533	0.83[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs41386047	0.80[CEU][hapmap]
rs6441379	0.81[CEU][hapmap]
rs6441380	0.80[CEU][hapmap]
rs6441381	0.81[CEU][hapmap]
rs6773923	0.81[CEU][hapmap]
rs6781716	0.82[EUR][1000 genomes]
rs6793693	0.82[EUR][1000 genomes]
rs7620901	0.83[EUR][1000 genomes]
rs7621711	0.82[EUR][1000 genomes]
rs7624657	0.81[CEU][hapmap]
rs7624747	0.83[CEU][hapmap]
rs7636548	0.81[CEU][hapmap]
rs7641444	0.84[EUR][1000 genomes]
rs7648970	0.81[CEU][hapmap]
rs7651540	0.81[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs872677	0.80[CEU][hapmap]
rs937811	0.84[CEU][hapmap]
rs971515	0.83[CHB][hapmap];0.94[JPT][hapmap];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs977380	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9847876	0.80[CEU][hapmap]
rs9868834	0.82[EUR][1000 genomes]
rs9883089	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533237	chr3:161019834-161804660	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	91 gene(s)	inside rSNPs	diseases
2	nsv829772	chr3:161047817-161202554	Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	88 gene(s)	inside rSNPs	diseases
3	nsv877710	chr3:161087857-161245414	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	84 gene(s)	inside rSNPs	diseases
4	nsv829773	chr3:161150422-161315189	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:161161200-161163200	Enhancers	HepG2	liver
2	chr3:161162600-161162800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr3:161162600-161163600	Enhancers	ES-I3 Cell Line	embryonic stem cell

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