Variant report

Variant	rs6781716
Chromosome Location	chr3:161268611-161268612
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:161258952..161261503-chr3:161267723..161269425,2	MCF-7	breast:

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10936229	0.83[CEU][hapmap]
rs13433795	0.83[CEU][hapmap]
rs1399906	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1399908	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1399909	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1399910	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1399915	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1399916	0.86[EUR][1000 genomes]
rs1506480	0.82[CEU][hapmap]
rs1506481	0.83[CEU][hapmap]
rs1515741	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1515743	0.86[EUR][1000 genomes]
rs1568020	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1597494	0.83[EUR][1000 genomes]
rs1601199	0.85[EUR][1000 genomes]
rs16832928	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1849999	0.82[ASN][1000 genomes]
rs1850000	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1878064	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1905532	0.82[CEU][hapmap]
rs2203490	0.83[EUR][1000 genomes]
rs41386047	0.82[CEU][hapmap]
rs4305435	0.84[EUR][1000 genomes]
rs4856709	0.84[EUR][1000 genomes]
rs4856712	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6441379	0.83[CEU][hapmap]
rs6441380	0.82[CEU][hapmap]
rs6441381	0.83[CEU][hapmap]
rs6441393	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6762110	0.92[CEU][hapmap];0.82[EUR][1000 genomes]
rs6773923	0.83[CEU][hapmap]
rs6793693	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7620901	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7621711	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7624657	0.83[CEU][hapmap]
rs7624747	0.81[CEU][hapmap]
rs7629214	0.84[EUR][1000 genomes]
rs7636548	0.83[CEU][hapmap]
rs7641444	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7648970	0.83[CEU][hapmap]
rs872677	0.82[CEU][hapmap]
rs9290088	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs937811	0.87[CEU][hapmap]
rs977380	0.86[EUR][1000 genomes]
rs9847876	0.82[CEU][hapmap]
rs9868834	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9871565	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9872386	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9876363	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9876608	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9877938	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9879265	0.83[ASN][1000 genomes]
rs9883089	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533237	chr3:161019834-161804660	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	91 gene(s)	inside rSNPs	diseases
2	nsv829773	chr3:161150422-161315189	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv829774	chr3:161229405-161386919	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv2422309	chr3:161242389-161425932	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:161266400-161274200	Weak transcription	Dnd41	blood
2	chr3:161266600-161270400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr3:161267000-161268800	Weak transcription	Fetal Muscle Leg	muscle
4	chr3:161267200-161270200	Weak transcription	Cortex derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links