Variant report

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1399906	0.87[EUR][1000 genomes]
rs1399908	0.87[EUR][1000 genomes]
rs1399909	0.87[EUR][1000 genomes]
rs1399910	0.87[EUR][1000 genomes]
rs1399915	0.80[EUR][1000 genomes]
rs1399916	0.84[EUR][1000 genomes]
rs1515741	0.84[EUR][1000 genomes]
rs1515743	0.84[EUR][1000 genomes]
rs1568020	0.82[EUR][1000 genomes]
rs1597494	0.87[EUR][1000 genomes]
rs1601199	0.89[EUR][1000 genomes]
rs16832928	0.87[EUR][1000 genomes]
rs1850000	0.84[EUR][1000 genomes]
rs1878064	0.86[EUR][1000 genomes]
rs2203490	0.81[EUR][1000 genomes]
rs4305435	0.82[EUR][1000 genomes]
rs4856709	0.82[EUR][1000 genomes]
rs4856712	0.80[EUR][1000 genomes]
rs6441393	0.82[EUR][1000 genomes]
rs6762110	0.88[CEU][hapmap];0.86[EUR][1000 genomes]
rs6781716	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6793693	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7620901	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7621711	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7629214	0.82[EUR][1000 genomes]
rs7641444	0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9290088	0.86[EUR][1000 genomes]
rs937811	0.80[CEU][hapmap]
rs977380	0.90[EUR][1000 genomes]
rs9868834	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9871565	0.85[EUR][1000 genomes]
rs9872386	0.84[EUR][1000 genomes]
rs9876363	0.85[EUR][1000 genomes]
rs9876608	0.84[EUR][1000 genomes]
rs9877938	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533237	chr3:161019834-161804660	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	91 gene(s)	inside rSNPs	diseases
2	nsv877710	chr3:161087857-161245414	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	84 gene(s)	inside rSNPs	diseases
3	nsv829773	chr3:161150422-161315189	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:161227000-161229800	Enhancers	Dnd41	blood

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