Variant report

Variant	rs9868834
Chromosome Location	chr3:161272774-161272775
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs1399906	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1399908	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1399909	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1399910	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1399915	0.82[EUR][1000 genomes]
rs1399916	0.86[EUR][1000 genomes]
rs1506481	0.80[CEU][hapmap]
rs1515741	0.86[EUR][1000 genomes]
rs1515743	0.86[EUR][1000 genomes]
rs1568020	0.84[EUR][1000 genomes]
rs1597494	0.83[EUR][1000 genomes]
rs1601199	0.85[EUR][1000 genomes]
rs16832928	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1849999	0.80[ASN][1000 genomes]
rs1850000	0.86[EUR][1000 genomes]
rs1878064	0.88[EUR][1000 genomes]
rs2203490	0.83[EUR][1000 genomes]
rs4305435	0.84[EUR][1000 genomes]
rs4856709	0.84[EUR][1000 genomes]
rs4856712	0.82[EUR][1000 genomes]
rs6441379	0.80[CEU][hapmap]
rs6441381	0.80[CEU][hapmap]
rs6441393	0.84[EUR][1000 genomes]
rs6762110	0.92[CEU][hapmap];0.82[EUR][1000 genomes]
rs6781716	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6793693	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7620901	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7621711	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7624657	0.80[CEU][hapmap]
rs7629214	0.84[EUR][1000 genomes]
rs7636548	0.80[CEU][hapmap]
rs7641444	0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9290088	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs937811	0.83[CEU][hapmap]
rs977380	0.86[EUR][1000 genomes]
rs9871565	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9872386	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9876363	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9876608	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9877938	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9879265	0.81[ASN][1000 genomes]
rs9883089	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533237	chr3:161019834-161804660	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	91 gene(s)	inside rSNPs	diseases
2	nsv829773	chr3:161150422-161315189	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv829774	chr3:161229405-161386919	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv2422309	chr3:161242389-161425932	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:161266400-161274200	Weak transcription	Dnd41	blood
2	chr3:161269200-161276800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr3:161270200-161275800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr3:161271200-161275000	Weak transcription	Brain Germinal Matrix	brain
5	chr3:161271400-161274600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr3:161271400-161275400	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr3:161271400-161276000	Weak transcription	Fetal Muscle Leg	muscle
8	chr3:161272200-161276800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr3:161272400-161272800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr3:161272400-161273600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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