Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1117344	0.83[ASN][1000 genomes]
rs12632883	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12633334	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1395294	0.80[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs1450531	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1450532	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1506471	0.89[EUR][1000 genomes]
rs1546395	0.82[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs1567061	0.91[EUR][1000 genomes]
rs1848041	0.82[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs34436128	0.83[ASN][1000 genomes]
rs4599324	0.84[ASN][1000 genomes]
rs4615094	0.82[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs7625210	0.83[ASN][1000 genomes]
rs7627320	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7641731	0.80[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs7642359	0.81[EUR][1000 genomes]
rs9816665	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9822904	0.91[EUR][1000 genomes]
rs9835278	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9835582	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9836881	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9836887	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9837148	0.83[ASN][1000 genomes]
rs9854937	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9858921	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533237	chr3:161019834-161804660	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	91 gene(s)	inside rSNPs	diseases
2	nsv877710	chr3:161087857-161245414	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	84 gene(s)	inside rSNPs	diseases
3	nsv829773	chr3:161150422-161315189	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:161205000-161206400	Enhancers	Monocytes-CD14+_RO01746	blood
2	chr3:161205800-161210000	Enhancers	Primary monocytes fromperipheralblood	blood

Quick Search: