Variant report

Variant	rs4615094
Chromosome Location	chr3:161278284-161278285
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:160813469..160814648-chr3:161277747..161278407,3	MCF-7	breast:
2	chr3:161277610..161278375-chr3:161317637..161318163,2	MCF-7	breast:
3	chr3:161277802..161278537-chr3:161469868..161470746,2	MCF-7	breast:
4	chr3:161089138..161091531-chr3:161277246..161278957,3	MCF-7	breast:
5	chr3:161139368..161142098-chr3:161277561..161279557,2	MCF-7	breast:
6	chr3:161141625..161142575-chr3:161277741..161278641,2	MCF-7	breast:
7	chr3:161277599..161279410-chr3:161282056..161284601,2	MCF-7	breast:
8	chr3:161125406..161127626-chr3:161276162..161278825,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000196542	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1395294	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1450531	0.81[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs1463946	0.93[CEU][hapmap]
rs1506471	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1546395	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1567061	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1848041	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3921595	0.85[CEU][hapmap]
rs4266208	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7432487	0.81[ASN][1000 genomes]
rs7627320	0.93[CEU][hapmap];0.82[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs7641731	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7642359	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9290084	0.82[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs9816665	0.92[CEU][hapmap];0.91[EUR][1000 genomes]
rs9822904	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9836881	0.93[CEU][hapmap];0.82[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs9836887	0.92[CEU][hapmap];0.81[AFR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533237	chr3:161019834-161804660	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	91 gene(s)	inside rSNPs	diseases
2	nsv829773	chr3:161150422-161315189	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv829774	chr3:161229405-161386919	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv2422309	chr3:161242389-161425932	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv877711	chr3:161275848-161486665	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:161272800-161279600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr3:161276600-161278400	Weak transcription	Fetal Heart	heart
3	chr3:161276800-161280400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr3:161277600-161278400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr3:161277600-161278400	Flanking Active TSS	Brain Hippocampus Middle	brain
6	chr3:161277600-161278600	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr3:161277600-161278600	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr3:161277800-161278400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr3:161277800-161278400	Enhancers	Brain Germinal Matrix	brain
10	chr3:161277800-161278400	Enhancers	Colon Smooth Muscle	Colon
11	chr3:161277800-161278400	Enhancers	Fetal Muscle Leg	muscle
12	chr3:161277800-161278600	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr3:161277800-161278600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
14	chr3:161278000-161278400	Enhancers	Adipose Nuclei	Adipose
15	chr3:161278000-161278400	Enhancers	Fetal Lung	lung
16	chr3:161278000-161278400	Enhancers	Fetal Muscle Trunk	muscle
17	chr3:161278000-161278400	Enhancers	Stomach Smooth Muscle	stomach
18	chr3:161278000-161278600	Enhancers	iPS-18 Cell Line	embryonic stem cell
19	chr3:161278000-161278600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr3:161278000-161278600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr3:161278000-161278600	Flanking Active TSS	Brain Anterior Caudate	brain
22	chr3:161278000-161280600	Weak transcription	Dnd41	blood
23	chr3:161278200-161278400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr3:161278200-161278400	Bivalent Enhancer	Liver	Liver
25	chr3:161278200-161278400	Enhancers	Brain Substantia Nigra	brain
26	chr3:161278200-161278400	Enhancers	A549	lung
27	chr3:161278200-161278600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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