Variant report

Variant	rs1450531
Chromosome Location	chr3:161200460-161200461
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1117344	0.83[ASN][1000 genomes]
rs11710086	0.91[JPT][hapmap]
rs11710916	0.90[JPT][hapmap]
rs12632883	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12633334	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1349352	0.91[JPT][hapmap]
rs1395294	0.90[EUR][1000 genomes]
rs1450524	0.91[CHB][hapmap]
rs1450532	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1463946	1.00[CEU][hapmap];0.95[YRI][hapmap]
rs1506471	0.88[EUR][1000 genomes]
rs1546395	0.82[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs1567061	0.90[EUR][1000 genomes]
rs16832279	0.90[JPT][hapmap]
rs1811483	0.91[JPT][hapmap]
rs1848041	0.82[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs34436128	0.83[ASN][1000 genomes]
rs3921595	0.85[CEU][hapmap]
rs404725	0.91[JPT][hapmap]
rs4599324	0.84[ASN][1000 genomes]
rs4615094	0.93[CEU][hapmap];0.81[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs7625210	0.91[CHB][hapmap];0.83[ASN][1000 genomes]
rs7627320	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7641731	0.90[EUR][1000 genomes]
rs7642359	0.80[EUR][1000 genomes]
rs9290084	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9816665	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9822904	0.90[EUR][1000 genomes]
rs9835278	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9835582	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9836881	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9836887	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9837148	0.83[ASN][1000 genomes]
rs9854937	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9858921	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533237	chr3:161019834-161804660	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	91 gene(s)	inside rSNPs	diseases
2	nsv829772	chr3:161047817-161202554	Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	88 gene(s)	inside rSNPs	diseases
3	nsv877710	chr3:161087857-161245414	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	84 gene(s)	inside rSNPs	diseases
4	nsv829773	chr3:161150422-161315189	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:161200200-161200600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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