Variant report

Variant	rs4266208
Chromosome Location	chr3:161366459-161366460
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1395294	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1463946	0.81[CEU][hapmap]
rs1506471	0.85[EUR][1000 genomes]
rs1515726	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1546395	0.86[EUR][1000 genomes]
rs1567061	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1588909	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1848041	0.86[EUR][1000 genomes]
rs4593045	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4615094	0.88[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7432487	0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7627320	0.81[CEU][hapmap]
rs7641731	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7642359	0.90[ASN][1000 genomes]
rs9290089	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9816665	0.91[ASW][hapmap];0.81[CEU][hapmap];0.84[TSI][hapmap]
rs9822904	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9836881	0.81[CEU][hapmap]
rs9836887	0.81[CEU][hapmap];0.84[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533237	chr3:161019834-161804660	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	91 gene(s)	inside rSNPs	diseases
2	nsv829774	chr3:161229405-161386919	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv2422309	chr3:161242389-161425932	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv877711	chr3:161275848-161486665	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1004255	chr3:161340249-161476537	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	esv2755105	chr3:161349991-161371789	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
7	esv2754526	chr3:161353644-161371789	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
8	nsv1012553	chr3:161354221-161371789	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:161361400-161367200	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr3:161361800-161367400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr3:161365400-161367600	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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