Variant report

Variant	rs337583
Chromosome Location	chr9:101500689-101500690
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:101498432..101500803-chr9:101503543..101505424,2	K562	blood:

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10119228	0.91[ASN][1000 genomes]
rs10125255	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10739704	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10987843	0.89[ASN][1000 genomes]
rs1555520	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs180038	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs180039	0.90[ASN][1000 genomes]
rs182877	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2058881	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2295922	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs337564	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs337565	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs337566	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs337567	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs337568	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs337570	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs337571	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs337580	0.80[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs337585	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs337586	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs337587	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs337588	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs337589	0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs337590	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs371521	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4133240	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4133831	0.87[EUR][1000 genomes]
rs429562	0.87[EUR][1000 genomes]
rs439347	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs453409	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4742740	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4742742	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4743274	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4743277	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4743279	0.88[ASN][1000 genomes]
rs4743280	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4743283	0.82[EUR][1000 genomes]
rs48418	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs507318	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6415847	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6415849	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs692824	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7029599	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7039118	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs754222	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7846846	0.86[ASN][1000 genomes]
rs7861840	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7867234	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7867317	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9409306	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv614936	chr9:101182698-101680380	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv893614	chr9:101340316-101671634	Enhancers Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	nsv893615	chr9:101356515-101678036	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
4	esv2830198	chr9:101477500-101512140	Strong transcription Weak transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101486400-101513000	Weak transcription	Right Atrium	heart
2	chr9:101489200-101501000	Weak transcription	Primary hematopoietic stem cells	blood
3	chr9:101489800-101520800	Weak transcription	Fetal Brain Male	brain
4	chr9:101491000-101504400	Weak transcription	A549	lung
5	chr9:101491000-101505800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr9:101491000-101518000	Weak transcription	Thymus	Thymus
7	chr9:101492800-101505800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr9:101493000-101507400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr9:101493400-101504400	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr9:101494000-101532600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr9:101494000-101535200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
12	chr9:101494200-101501200	Weak transcription	K562	blood
13	chr9:101494200-101505600	Weak transcription	Colon Smooth Muscle	Colon
14	chr9:101494200-101509000	Strong transcription	Primary T cells from cord blood	blood
15	chr9:101494200-101516800	Weak transcription	Psoas Muscle	Psoas
16	chr9:101494400-101553000	Weak transcription	Fetal Heart	heart
17	chr9:101494600-101520800	Weak transcription	Fetal Kidney	kidney
18	chr9:101494800-101506200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr9:101495400-101504400	Weak transcription	HMEC	breast
20	chr9:101495400-101504400	Weak transcription	Osteobl	bone
21	chr9:101495800-101504200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr9:101496000-101501000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr9:101496000-101502200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr9:101496600-101549400	Weak transcription	Small Intestine	intestine
25	chr9:101496800-101508400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr9:101497200-101506400	Weak transcription	Primary T cells fromperipheralblood	blood
27	chr9:101497400-101504400	Weak transcription	NHEK	skin
28	chr9:101497600-101518000	Weak transcription	Primary B cells from cord blood	blood
29	chr9:101498400-101504400	Weak transcription	NHDF-Ad	bronchial
30	chr9:101498400-101507400	Weak transcription	Primary B cells from peripheral blood	blood
31	chr9:101498400-101509000	Weak transcription	Fetal Thymus	thymus
32	chr9:101498600-101501000	Weak transcription	Brain Germinal Matrix	brain
33	chr9:101498600-101504400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr9:101498600-101504400	Weak transcription	HSMM	muscle
35	chr9:101498600-101505200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
36	chr9:101498600-101506600	Weak transcription	Liver	Liver
37	chr9:101498600-101507000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
38	chr9:101498600-101510200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr9:101498600-101511600	Weak transcription	HSMMtube	muscle
40	chr9:101498800-101500800	Weak transcription	Spleen	Spleen
41	chr9:101498800-101501000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr9:101498800-101501000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr9:101498800-101501000	Weak transcription	Fetal Lung	lung
44	chr9:101498800-101501200	Weak transcription	H1 Cell Line	embryonic stem cell
45	chr9:101498800-101501200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr9:101498800-101501400	Weak transcription	Rectal Mucosa Donor 29	rectum
47	chr9:101498800-101501600	Weak transcription	H9 Cell Line	embryonic stem cell
48	chr9:101498800-101504400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
49	chr9:101498800-101504600	Weak transcription	NHLF	lung
50	chr9:101498800-101505200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood

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