Variant report

Variant	rs9409306
Chromosome Location	chr9:101491882-101491883
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:101485249..101488278-chr9:101490736..101494651,3	K562	blood:
2	chr9:101490049..101492032-chr9:101495969..101498022,2	MCF-7	breast:
3	chr9:101490719..101492299-chr9:101497979..101499574,2	K562	blood:

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10119228	0.94[ASN][1000 genomes]
rs10125255	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10739704	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10987843	0.93[ASN][1000 genomes]
rs1555520	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs180038	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs180039	0.94[ASN][1000 genomes]
rs182877	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2058881	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2295922	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs337564	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs337565	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs337566	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs337567	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs337568	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs337570	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs337571	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs337580	0.80[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs337583	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs337585	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs337586	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs337587	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs337588	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs337589	0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs337590	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs371521	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4133240	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4133831	0.87[EUR][1000 genomes]
rs429562	0.87[EUR][1000 genomes]
rs439347	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs453409	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4742740	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4742742	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4743274	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4743277	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4743279	0.91[ASN][1000 genomes]
rs4743280	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4743283	0.82[EUR][1000 genomes]
rs48418	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs507318	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6415847	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs6415849	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs692824	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7029599	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7039118	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs754222	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7846846	0.89[ASN][1000 genomes]
rs7861840	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7867234	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7867317	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv614936	chr9:101182698-101680380	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv893614	chr9:101340316-101671634	Enhancers Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	nsv893615	chr9:101356515-101678036	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
4	esv2830198	chr9:101477500-101512140	Strong transcription Weak transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101486400-101513000	Weak transcription	Right Atrium	heart
2	chr9:101488400-101494000	Weak transcription	Left Ventricle	heart
3	chr9:101489000-101496600	Weak transcription	Primary B cells from cord blood	blood
4	chr9:101489000-101497400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr9:101489000-101498200	Weak transcription	Brain Germinal Matrix	brain
6	chr9:101489200-101495600	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr9:101489200-101501000	Weak transcription	Primary hematopoietic stem cells	blood
8	chr9:101489400-101494200	Weak transcription	Fetal Brain Female	brain
9	chr9:101489400-101496800	Weak transcription	Brain Cingulate Gyrus	brain
10	chr9:101489400-101497200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr9:101489400-101498200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr9:101489600-101494200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr9:101489600-101496000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr9:101489600-101497000	Weak transcription	Brain Angular Gyrus	brain
15	chr9:101489600-101497800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr9:101489600-101497800	Weak transcription	Fetal Thymus	thymus
17	chr9:101489800-101520800	Weak transcription	Fetal Brain Male	brain
18	chr9:101490000-101495000	Weak transcription	Gastric	stomach
19	chr9:101490000-101495600	Weak transcription	Adipose Nuclei	Adipose
20	chr9:101490200-101497600	Weak transcription	Primary B cells from peripheral blood	blood
21	chr9:101490600-101497000	Weak transcription	HSMM	muscle
22	chr9:101491000-101492800	Weak transcription	Fetal Intestine Small	intestine
23	chr9:101491000-101495600	Weak transcription	Fetal Intestine Large	intestine
24	chr9:101491000-101496000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr9:101491000-101504400	Weak transcription	A549	lung
26	chr9:101491000-101505800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr9:101491000-101518000	Weak transcription	Thymus	Thymus
28	chr9:101491400-101492000	Enhancers	Fetal Muscle Trunk	muscle
29	chr9:101491400-101496000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr9:101491800-101495400	Weak transcription	Placenta Amnion	Placenta Amnion
31	chr9:101491800-101495600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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