The 2.0 version of rSNPBase

Variant report

Variant rs338562
Chromosome Location chr1:184776193-184776194
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:65 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:184756800-184794000 Weak transcription Thymus Thymus
2 chr1:184762000-184781600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
3 chr1:184762000-184787800 Weak transcription Spleen Spleen
4 chr1:184762400-184789400 Weak transcription Duodenum Mucosa Duodenum
5 chr1:184762600-184792800 Weak transcription Colonic Mucosa Colon
6 chr1:184763000-184782800 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
7 chr1:184763800-184781200 Weak transcription iPS-20b Cell Line embryonic stem cell
8 chr1:184764800-184779000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
9 chr1:184766200-184776600 Weak transcription Fetal Stomach stomach
10 chr1:184768000-184809200 Weak transcription Primary T helper naive cells from peripheral blood blood
11 chr1:184770800-184776600 Weak transcription Right Ventricle heart
12 chr1:184770800-184777000 Weak transcription Primary mononuclear cells fromperipheralblood Blood
13 chr1:184770800-184787000 Weak transcription Gastric stomach
14 chr1:184771800-184782800 Weak transcription NHLF lung
15 chr1:184772000-184792000 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
16 chr1:184772400-184801800 Weak transcription Primary T cells from cord blood blood
17 chr1:184772600-184782600 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
18 chr1:184772800-184776800 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
19 chr1:184772800-184782600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
20 chr1:184772800-184790600 Weak transcription Primary T helper cells fromperipheralblood blood
21 chr1:184773000-184781800 Weak transcription NHEK skin
22 chr1:184773200-184809400 Weak transcription Primary T helper cells PMA-I stimulated --
23 chr1:184773400-184777400 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
24 chr1:184773600-184780600 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
25 chr1:184773800-184776400 Weak transcription Cortex derived primary cultured neurospheres brain
26 chr1:184773800-184776800 Weak transcription Left Ventricle heart
27 chr1:184774800-184776400 Enhancers Primary monocytes fromperipheralblood blood
28 chr1:184775000-184776400 Enhancers Primary hematopoietic stem cells blood
29 chr1:184775000-184776600 Enhancers Primary B cells from cord blood blood
30 chr1:184775000-184776600 Enhancers Primary hematopoietic stem cells short term culture blood
31 chr1:184775000-184776600 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
32 chr1:184775200-184776400 Flanking Active TSS Primary neutrophils fromperipheralblood blood
33 chr1:184775200-184781200 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
34 chr1:184775200-184781600 Weak transcription HUES48 Cell Line embryonic stem cell
35 chr1:184775200-184787400 Weak transcription Primary T cells fromperipheralblood blood
36 chr1:184775400-184777000 Weak transcription Duodenum Smooth Muscle Duodenum
37 chr1:184775400-184777600 Strong transcription Primary T regulatory cells fromperipheralblood blood
38 chr1:184775400-184780000 Weak transcription Adipose Nuclei Adipose
39 chr1:184775400-184780000 Weak transcription Skeletal Muscle Male skeletal muscle
40 chr1:184775400-184783000 Weak transcription NHDF-Ad bronchial
41 chr1:184775400-184787800 Weak transcription Esophagus oesophagus
42 chr1:184775400-184791600 Weak transcription Stomach Mucosa stomach
43 chr1:184775600-184776400 Weak transcription Primary Natural Killer cells fromperipheralblood blood
44 chr1:184775600-184776600 Weak transcription Pancreas Pancrea
45 chr1:184775600-184776800 Weak transcription Lung lung
46 chr1:184775600-184777000 Weak transcription Primary T helper 17 cells PMA-I stimulated --
47 chr1:184775600-184778000 Strong transcription Fetal Muscle Leg muscle
48 chr1:184775600-184779800 Strong transcription Breast Myoepithelial Primary Cells Breast
49 chr1:184775600-184779800 Weak transcription Colon Smooth Muscle Colon
50 chr1:184775600-184781000 Weak transcription Psoas Muscle Psoas

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Last update: Aug 31, 2015