The 2.0 version of rSNPBase

Variant report

Variant rs338571
Chromosome Location chr1:184779093-184779094
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:63 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:184756800-184794000 Weak transcription Thymus Thymus
2 chr1:184762000-184781600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
3 chr1:184762000-184787800 Weak transcription Spleen Spleen
4 chr1:184762400-184789400 Weak transcription Duodenum Mucosa Duodenum
5 chr1:184762600-184792800 Weak transcription Colonic Mucosa Colon
6 chr1:184763000-184782800 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
7 chr1:184763800-184781200 Weak transcription iPS-20b Cell Line embryonic stem cell
8 chr1:184768000-184809200 Weak transcription Primary T helper naive cells from peripheral blood blood
9 chr1:184770800-184787000 Weak transcription Gastric stomach
10 chr1:184771800-184782800 Weak transcription NHLF lung
11 chr1:184772000-184792000 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
12 chr1:184772400-184801800 Weak transcription Primary T cells from cord blood blood
13 chr1:184772600-184782600 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
14 chr1:184772800-184782600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
15 chr1:184772800-184790600 Weak transcription Primary T helper cells fromperipheralblood blood
16 chr1:184773000-184781800 Weak transcription NHEK skin
17 chr1:184773200-184809400 Weak transcription Primary T helper cells PMA-I stimulated --
18 chr1:184773600-184780600 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
19 chr1:184775200-184781200 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
20 chr1:184775200-184781600 Weak transcription HUES48 Cell Line embryonic stem cell
21 chr1:184775200-184787400 Weak transcription Primary T cells fromperipheralblood blood
22 chr1:184775400-184780000 Weak transcription Adipose Nuclei Adipose
23 chr1:184775400-184780000 Weak transcription Skeletal Muscle Male skeletal muscle
24 chr1:184775400-184783000 Weak transcription NHDF-Ad bronchial
25 chr1:184775400-184787800 Weak transcription Esophagus oesophagus
26 chr1:184775400-184791600 Weak transcription Stomach Mucosa stomach
27 chr1:184775600-184779800 Strong transcription Breast Myoepithelial Primary Cells Breast
28 chr1:184775600-184779800 Weak transcription Colon Smooth Muscle Colon
29 chr1:184775600-184781000 Weak transcription Psoas Muscle Psoas
30 chr1:184775600-184781800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
31 chr1:184775600-184796800 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
32 chr1:184775800-184779600 Weak transcription Rectal Smooth Muscle rectum
33 chr1:184775800-184784200 Weak transcription Fetal Heart heart
34 chr1:184775800-184794000 Weak transcription Primary B cells from peripheral blood blood
35 chr1:184776000-184779200 Weak transcription GM12878-XiMat blood
36 chr1:184776000-184779800 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
37 chr1:184776400-184781800 Weak transcription Primary hematopoietic stem cells blood
38 chr1:184776600-184782800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
39 chr1:184777000-184792200 Strong transcription Monocytes-CD14+_RO01746 blood
40 chr1:184777400-184779600 Weak transcription Skeletal Muscle Female skeletal muscle
41 chr1:184777400-184780000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
42 chr1:184777400-184781600 Weak transcription Primary Natural Killer cells fromperipheralblood blood
43 chr1:184777400-184791600 Weak transcription Pancreas Pancrea
44 chr1:184777600-184779600 Weak transcription Primary T regulatory cells fromperipheralblood blood
45 chr1:184777600-184780000 Weak transcription Duodenum Smooth Muscle Duodenum
46 chr1:184777600-184786800 Weak transcription Primary T helper 17 cells PMA-I stimulated --
47 chr1:184777600-184787600 Weak transcription Lung lung
48 chr1:184777800-184780000 Weak transcription Fetal Stomach stomach
49 chr1:184777800-184781400 Weak transcription Cortex derived primary cultured neurospheres brain
50 chr1:184777800-184782800 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung

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Last update: Aug 31, 2015