The 2.0 version of rSNPBase

Variant report

Variant rs338899
Chromosome Location chr5:145178399-145178400
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:51 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:145105400-145179000 Weak transcription Pancreas Pancrea
2 chr5:145109400-145194400 Weak transcription Colonic Mucosa Colon
3 chr5:145141200-145194400 Weak transcription Stomach Smooth Muscle stomach
4 chr5:145158400-145179000 Weak transcription Gastric stomach
5 chr5:145158400-145196400 Weak transcription Primary hematopoietic stem cells short term culture blood
6 chr5:145158400-145207000 Weak transcription Esophagus oesophagus
7 chr5:145161000-145183400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
8 chr5:145162800-145198200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
9 chr5:145162800-145212800 Weak transcription Rectal Smooth Muscle rectum
10 chr5:145165800-145184800 Weak transcription Duodenum Smooth Muscle Duodenum
11 chr5:145167200-145185200 Weak transcription K562 blood
12 chr5:145167400-145200600 Weak transcription Fetal Adrenal Gland Adrenal Gland
13 chr5:145167800-145179000 Weak transcription Ovary ovary
14 chr5:145167800-145191600 Weak transcription Left Ventricle heart
15 chr5:145167800-145194800 Weak transcription Fetal Lung lung
16 chr5:145168000-145183000 Weak transcription Fetal Intestine Small intestine
17 chr5:145168000-145203600 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
18 chr5:145168200-145191200 Weak transcription Fetal Heart heart
19 chr5:145170200-145195400 Weak transcription HepG2 liver
20 chr5:145170600-145213400 Weak transcription Placenta Amnion Placenta Amnion
21 chr5:145171800-145179000 Weak transcription Aorta Aorta
22 chr5:145171800-145179000 Weak transcription Lung lung
23 chr5:145171800-145188000 Weak transcription Fetal Stomach stomach
24 chr5:145172800-145191000 Weak transcription Fetal Muscle Leg muscle
25 chr5:145172800-145196200 Weak transcription Skeletal Muscle Female skeletal muscle
26 chr5:145172800-145214200 Weak transcription Right Ventricle heart
27 chr5:145174200-145209200 Weak transcription Colon Smooth Muscle Colon
28 chr5:145175200-145178800 Weak transcription Rectal Mucosa Donor 29 rectum
29 chr5:145175200-145205000 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
30 chr5:145175400-145179000 Weak transcription Duodenum Mucosa Duodenum
31 chr5:145175600-145183000 Weak transcription Breast Myoepithelial Primary Cells Breast
32 chr5:145176200-145178800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
33 chr5:145176400-145178800 Strong transcription Primary hematopoietic stem cells blood
34 chr5:145176600-145179400 Weak transcription Liver Liver
35 chr5:145177200-145179000 Weak transcription Adipose Nuclei Adipose
36 chr5:145177200-145179000 Weak transcription Rectal Mucosa Donor 31 rectum
37 chr5:145177200-145179000 Weak transcription Sigmoid Colon Sigmoid Colon
38 chr5:145177200-145179800 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
39 chr5:145177200-145184200 Weak transcription HUES64 Cell Line embryonic stem cell
40 chr5:145177200-145185200 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
41 chr5:145177200-145206800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
42 chr5:145177200-145209000 Weak transcription Muscle Satellite Cultured Cells --
43 chr5:145177200-145209200 Weak transcription NH-A brain
44 chr5:145177400-145178800 Weak transcription Fetal Intestine Large intestine
45 chr5:145177400-145182800 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
46 chr5:145177400-145182800 Weak transcription HMEC breast
47 chr5:145177400-145183800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
48 chr5:145177400-145184200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
49 chr5:145177400-145209000 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
50 chr5:145177600-145191600 Weak transcription HUVEC blood vessel

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Last update: Aug 31, 2015