Variant report

Variant	rs33951240
Chromosome Location	chr22:32439318-32439319
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr22:32438378..32439944-chr22:32477571..32479110,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-YWHAH-4	chr22:32439020-32439403	NONHSAT084935

Variant related genes	Relation type
ENSG00000100170	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs16989842	1.00[EUR][1000 genomes]
rs16989845	1.00[EUR][1000 genomes]
rs16989863	1.00[EUR][1000 genomes]
rs16989871	1.00[EUR][1000 genomes]
rs73881607	1.00[EUR][1000 genomes]
rs73884241	1.00[EUR][1000 genomes]
rs73884243	1.00[EUR][1000 genomes]
rs73884260	1.00[EUR][1000 genomes]
rs8139891	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1055450	chr22:32356150-32468832	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
2	nsv1055925	chr22:32358540-32450200	Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
3	nsv1063876	chr22:32358540-32463271	Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
4	nsv1061546	chr22:32358991-32464350	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Weak transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
5	nsv1059240	chr22:32362689-32462511	Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
6	nsv544678	chr22:32362689-32462511	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
7	nsv1060529	chr22:32370432-32525699	Flanking Active TSS Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
8	nsv1063267	chr22:32379851-32462650	Weak transcription Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
9	nsv544679	chr22:32379851-32462650	Weak transcription Active TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
10	nsv1067007	chr22:32400566-32452776	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
11	nsv1065893	chr22:32400566-32453047	Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
12	nsv834177	chr22:32416679-32594663	Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:32438200-32439600	Bivalent Enhancer	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr22:32438200-32439800	Enhancers	Esophagus	oesophagus
3	chr22:32438200-32440000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr22:32438400-32439600	Enhancers	HMEC	breast
5	chr22:32438600-32439400	Bivalent Enhancer	NHEK	skin
6	chr22:32438600-32439600	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr22:32438600-32440000	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr22:32438800-32439400	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr22:32438800-32439400	Enhancers	Gastric	stomach
10	chr22:32438800-32439400	Bivalent Enhancer	Lung	lung
11	chr22:32438800-32440000	Active TSS	Pancreatic Islets	Pancreatic Islet
12	chr22:32439000-32439400	Bivalent/Poised TSS	Colonic Mucosa	Colon
13	chr22:32439000-32440400	Active TSS	Fetal Intestine Large	intestine
14	chr22:32439000-32441400	Active TSS	Fetal Intestine Small	intestine
15	chr22:32439200-32439400	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
16	chr22:32439200-32439400	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
17	chr22:32439200-32439400	Flanking Bivalent TSS/Enh	Sigmoid Colon	Sigmoid Colon
18	chr22:32439200-32439400	Flanking Bivalent TSS/Enh	Stomach Mucosa	stomach
19	chr22:32439200-32439400	Bivalent Enhancer	Stomach Smooth Muscle	stomach
20	chr22:32439200-32439600	Bivalent/Poised TSS	Duodenum Mucosa	Duodenum
21	chr22:32439200-32439600	Flanking Active TSS	Pancreas	Pancrea
22	chr22:32439200-32439600	Active TSS	Small Intestine	intestine
23	chr22:32439200-32439800	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
24	chr22:32439200-32439800	Active TSS	Rectal Smooth Muscle	rectum
25	chr22:32439200-32440200	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
26	chr22:32439200-32444200	Weak transcription	Fetal Heart	heart

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