Variant report

Variant	rs73884241
Chromosome Location	chr22:32338615-32338616
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr22:32333714..32338666-chr22:32338808..32341895,4	MCF-7	breast:
2	22:31829733-31836635..22:32338420-32342898	K562	blood:
3	chr22:32265561..32271092-chr22:32337255..32342585,8	MCF-7	breast:
4	chr22:32329388..32335571-chr22:32336708..32343906,17	K562	blood:
5	chr22:31891953..31894092-chr22:32338116..32340290,2	MCF-7	breast:
6	22:31936958-31958600..22:32338420-32342898	K562	blood:
7	chr22:32143477..32146279-chr22:32338429..32340320,2	MCF-7	breast:
8	22:32284948-32287956..22:32338420-32342898	Hela-S3	cervix:
9	chr22:32276050..32278194-chr22:32336744..32339225,2	MCF-7	breast:
10	22:32150875-32154575..22:32338420-32342898	K562	blood:

No data

Variant related genes	Relation type
ENSG00000242251	Chromatin interaction
ENSG00000128254	Chromatin interaction
ENSG00000214093	Chromatin interaction
ENSG00000227813	Chromatin interaction
ENSG00000100150	Chromatin interaction
ENSG00000183530	Chromatin interaction
ENSG00000184708	Chromatin interaction
ENSG00000198089	Chromatin interaction
ENSG00000128245	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12106614	1.00[AMR][1000 genomes]
rs16989842	1.00[EUR][1000 genomes]
rs16989845	1.00[EUR][1000 genomes]
rs16989863	1.00[EUR][1000 genomes]
rs16989871	1.00[EUR][1000 genomes]
rs33951240	1.00[EUR][1000 genomes]
rs5998107	1.00[EUR][1000 genomes]
rs73881607	1.00[EUR][1000 genomes]
rs73884243	1.00[EUR][1000 genomes]
rs73884260	1.00[EUR][1000 genomes]
rs8139891	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428046	chr22:32316302-32356963	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:32304400-32339600	Weak transcription	Brain Germinal Matrix	brain
2	chr22:32325200-32338800	Weak transcription	Fetal Thymus	thymus
3	chr22:32326000-32339600	Weak transcription	Fetal Lung	lung
4	chr22:32326400-32339200	Weak transcription	Fetal Stomach	stomach
5	chr22:32329200-32339600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr22:32330400-32339400	Weak transcription	Pancreas	Pancrea
7	chr22:32331200-32339600	Weak transcription	Brain Substantia Nigra	brain
8	chr22:32332200-32339600	Weak transcription	Brain Cingulate Gyrus	brain
9	chr22:32332400-32339400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr22:32332400-32339600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr22:32332600-32339400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr22:32332800-32339400	Weak transcription	Brain Hippocampus Middle	brain
13	chr22:32332800-32339400	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr22:32332800-32339600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr22:32333000-32339600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr22:32333400-32339600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr22:32334000-32339400	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr22:32334200-32339400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr22:32334200-32339400	Weak transcription	Fetal Heart	heart
20	chr22:32334600-32339400	Weak transcription	Fetal Muscle Leg	muscle
21	chr22:32334800-32339400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr22:32334800-32339400	Weak transcription	Fetal Brain Female	brain
23	chr22:32335600-32339400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr22:32335600-32339400	Weak transcription	Fetal Brain Male	brain
25	chr22:32335600-32339600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr22:32335600-32339600	Weak transcription	Cortex derived primary cultured neurospheres	brain
27	chr22:32336000-32339400	Weak transcription	Spleen	Spleen
28	chr22:32336200-32339400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr22:32336200-32339600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr22:32336800-32339600	Enhancers	K562	blood
31	chr22:32337000-32339600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
32	chr22:32337400-32338800	Weak transcription	HepG2	liver
33	chr22:32338200-32338800	Enhancers	Primary neutrophils fromperipheralblood	blood
34	chr22:32338200-32339400	Enhancers	Monocytes-CD14+_RO01746	blood
35	chr22:32338200-32339600	Enhancers	Primary monocytes fromperipheralblood	blood
36	chr22:32338400-32339400	Enhancers	A549	lung
37	chr22:32338400-32339600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr22:32338400-32339600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
39	chr22:32338600-32339400	Enhancers	Primary hematopoietic stem cells	blood
40	chr22:32338600-32339600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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