Variant report

Variant	rs33962176
Chromosome Location	chr11:32852172-32852173
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:32851501..32854370-chr11:32879596..32881538,2	MCF-7	breast:
2	chr11:32849868..32852880-chr11:32911360..32916794,6	MCF-7	breast:
3	chr11:32851440..32852221-chr2:173420119..173420696,2	Hela-S3	cervix:
4	chr11:32850001..32854483-chr11:32912810..32915962,5	MCF-7	breast:
5	chr11:32851461..32852210-chr3:49058647..49059440,2	NB4	blood:
6	chr11:32850121..32852277-chr11:33088797..33091531,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000176148	Chromatin interaction
ENSG00000152256	Chromatin interaction
ENSG00000060749	Chromatin interaction
ENSG00000178057	Chromatin interaction
ENSG00000178149	Chromatin interaction

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs12786991	0.87[AFR][1000 genomes]
rs12787584	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12788481	0.87[AFR][1000 genomes]
rs12795140	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12795720	0.87[AFR][1000 genomes]
rs12796122	0.87[AFR][1000 genomes]
rs12798179	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12798894	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12799094	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12800054	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34196291	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34505276	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35052572	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35063285	0.87[AFR][1000 genomes]
rs35094154	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35180128	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35509112	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35758532	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35946642	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35984272	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs36028504	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs36049175	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61889462	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61889481	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61889482	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61889485	0.87[AFR][1000 genomes]
rs61889491	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61889492	0.81[AFR][1000 genomes]
rs61889495	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61889498	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61889500	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61889515	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7118737	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs71455492	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs71479181	0.87[AFR][1000 genomes]
rs71479182	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71479183	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71479184	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71479185	0.87[AFR][1000 genomes]
rs71479186	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758262	chr11:32714643-33049940	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
2	esv2759815	chr11:32714643-33049940	Flanking Active TSS Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
3	esv2757434	chr11:32792784-32958609	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
4	esv34742	chr11:32796092-33004024	Weak transcription Strong transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
5	esv2753057	chr11:32796124-33061724	Enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases
6	esv2753743	chr11:32796124-33084924	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases
7	nsv897190	chr11:32801921-32951836	Strong transcription Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
8	nsv897191	chr11:32805169-32903263	Flanking Bivalent TSS/Enh Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
9	nsv897192	chr11:32828760-32903263	Flanking Active TSS Weak transcription Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
10	nsv897193	chr11:32838288-32903263	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:32850600-32852200	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
2	chr11:32850600-32852200	Active TSS	Hela-S3	cervix
3	chr11:32850600-32852400	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
4	chr11:32850600-32852400	Active TSS	Breast Myoepithelial Primary Cells	Breast
5	chr11:32850600-32852400	Flanking Active TSS	Primary hematopoietic stem cells	blood
6	chr11:32850600-32852400	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr11:32850600-32852400	Active TSS	Rectal Mucosa Donor 29	rectum
8	chr11:32850600-32852400	Active TSS	Rectal Smooth Muscle	rectum
9	chr11:32850600-32852800	Active TSS	Duodenum Mucosa	Duodenum
10	chr11:32850600-32853000	Active TSS	Pancreatic Islets	Pancreatic Islet
11	chr11:32850800-32852200	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
12	chr11:32850800-32852200	Active TSS	H9 Cell Line	embryonic stem cell
13	chr11:32850800-32852200	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
14	chr11:32850800-32852200	Flanking Bivalent TSS/Enh	Primary B cells from cord blood	blood
15	chr11:32850800-32852200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
16	chr11:32850800-32852200	Flanking Active TSS	Adipose Nuclei	Adipose
17	chr11:32850800-32852200	Active TSS	Colonic Mucosa	Colon
18	chr11:32850800-32852200	Active TSS	Lung	lung
19	chr11:32850800-32852200	Active TSS	Stomach Mucosa	stomach
20	chr11:32850800-32852200	Bivalent/Poised TSS	NHDF-Ad	bronchial
21	chr11:32850800-32852400	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
22	chr11:32850800-32852400	Bivalent/Poised TSS	Thymus	Thymus
23	chr11:32850800-32852800	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr11:32850800-32852800	Bivalent/Poised TSS	Fetal Kidney	kidney
25	chr11:32850800-32853000	Active TSS	Duodenum Smooth Muscle	Duodenum
26	chr11:32850800-32853000	Active TSS	Esophagus	oesophagus
27	chr11:32851000-32852200	Bivalent/Poised TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr11:32851000-32852200	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
29	chr11:32851000-32852200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr11:32851000-32852200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr11:32851000-32852200	Bivalent/Poised TSS	Fetal Thymus	thymus
32	chr11:32851000-32852200	Active TSS	Pancreas	Pancrea
33	chr11:32851000-32852400	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
34	chr11:32851000-32852400	Active TSS	Fetal Intestine Large	intestine
35	chr11:32851200-32852200	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
36	chr11:32851200-32852200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
37	chr11:32851200-32852200	Active TSS	Liver	Liver
38	chr11:32851200-32852400	Active TSS	Rectal Mucosa Donor 31	rectum
39	chr11:32851400-32852200	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
40	chr11:32851400-32852200	Active TSS	HepG2	liver
41	chr11:32851600-32852200	Flanking Bivalent TSS/Enh	Primary T regulatory cells fromperipheralblood	blood
42	chr11:32851600-32852200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr11:32851600-32852200	Flanking Active TSS	NHLF	lung
44	chr11:32851600-32852400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr11:32851600-32852600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr11:32851800-32852200	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
47	chr11:32851800-32852200	Bivalent Enhancer	Fetal Lung	lung
48	chr11:32851800-32852200	Flanking Bivalent TSS/Enh	Stomach Smooth Muscle	stomach
49	chr11:32851800-32852800	Flanking Active TSS	HMEC	breast
50	chr11:32852000-32852200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links