Variant report

Variant	rs71479181
Chromosome Location	chr11:32837843-32837844
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs12786991	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12787584	0.88[AFR][1000 genomes]
rs12788481	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12795140	0.94[AFR][1000 genomes]
rs12795720	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12796122	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12798179	0.94[AFR][1000 genomes]
rs12798894	0.94[AFR][1000 genomes]
rs12799094	0.94[AFR][1000 genomes]
rs12799835	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12800054	0.94[AFR][1000 genomes]
rs33962176	0.87[AFR][1000 genomes]
rs34139105	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34196291	0.87[AFR][1000 genomes]
rs34363848	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34505276	0.88[AFR][1000 genomes]
rs34703457	0.87[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs35052572	0.94[AFR][1000 genomes]
rs35063285	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35094154	0.94[AFR][1000 genomes]
rs35180128	0.94[AFR][1000 genomes]
rs35509112	0.94[AFR][1000 genomes]
rs35758532	0.88[AFR][1000 genomes]
rs35946642	0.94[AFR][1000 genomes]
rs35984272	0.94[AFR][1000 genomes]
rs36028504	0.94[AFR][1000 genomes]
rs36049175	0.94[AFR][1000 genomes]
rs36104531	0.87[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs61889462	0.94[AFR][1000 genomes]
rs61889481	0.80[AFR][1000 genomes]
rs61889482	0.94[AFR][1000 genomes]
rs61889485	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61889486	0.80[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs61889487	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61889490	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61889491	0.94[AFR][1000 genomes]
rs61889492	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61889495	0.94[AFR][1000 genomes]
rs61889498	0.94[AFR][1000 genomes]
rs61889500	0.94[AFR][1000 genomes]
rs61889515	0.94[AFR][1000 genomes]
rs7118737	0.94[AFR][1000 genomes]
rs71479182	0.94[AFR][1000 genomes]
rs71479183	0.94[AFR][1000 genomes]
rs71479184	0.94[AFR][1000 genomes]
rs71479185	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs71479186	0.94[AFR][1000 genomes]
rs71479188	0.87[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs7948092	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758262	chr11:32714643-33049940	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
2	esv2759815	chr11:32714643-33049940	Flanking Active TSS Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
3	esv2757434	chr11:32792784-32958609	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
4	esv34742	chr11:32796092-33004024	Weak transcription Strong transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
5	esv2753057	chr11:32796124-33061724	Enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases
6	esv2753743	chr11:32796124-33084924	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases
7	nsv897190	chr11:32801921-32951836	Strong transcription Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
8	nsv897191	chr11:32805169-32903263	Flanking Bivalent TSS/Enh Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
9	nsv897192	chr11:32828760-32903263	Flanking Active TSS Weak transcription Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:32837400-32850800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr11:32837600-32839800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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