Variant report

Variant	rs36104531
Chromosome Location	chr11:32905825-32905826
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:32904524..32910209-chr11:32910222..32915650,10	MCF-7	breast:

Variant related genes	Relation type
ENSG00000060749	Chromatin interaction

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs12786991	0.87[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs12788481	0.87[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs12795140	0.81[AFR][1000 genomes]
rs12795720	0.87[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs12796122	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12798179	0.81[AFR][1000 genomes]
rs12798894	0.81[AFR][1000 genomes]
rs12799094	0.81[AFR][1000 genomes]
rs12799835	1.00[EUR][1000 genomes]
rs12800054	0.81[AFR][1000 genomes]
rs34139105	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs34363848	0.94[EUR][1000 genomes]
rs34703457	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35052572	0.81[AFR][1000 genomes]
rs35063285	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs35094154	0.81[AFR][1000 genomes]
rs35180128	0.81[AFR][1000 genomes]
rs35509112	0.81[AFR][1000 genomes]
rs35946642	0.81[AFR][1000 genomes]
rs35984272	0.81[AFR][1000 genomes]
rs36028504	0.81[AFR][1000 genomes]
rs36049175	0.81[AFR][1000 genomes]
rs61889462	0.81[AFR][1000 genomes]
rs61889482	0.81[AFR][1000 genomes]
rs61889485	0.87[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs61889486	0.81[EUR][1000 genomes]
rs61889487	0.94[EUR][1000 genomes]
rs61889490	0.97[EUR][1000 genomes]
rs61889491	0.81[AFR][1000 genomes]
rs61889492	0.81[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs61889495	0.81[AFR][1000 genomes]
rs61889498	0.81[AFR][1000 genomes]
rs61889500	0.81[AFR][1000 genomes]
rs61889515	0.81[AFR][1000 genomes]
rs7118737	0.81[AFR][1000 genomes]
rs71479181	0.87[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs71479182	0.81[AFR][1000 genomes]
rs71479183	0.81[AFR][1000 genomes]
rs71479184	0.81[AFR][1000 genomes]
rs71479185	0.87[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs71479186	0.81[AFR][1000 genomes]
rs71479188	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7948092	0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758262	chr11:32714643-33049940	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
2	esv2759815	chr11:32714643-33049940	Flanking Active TSS Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
3	esv2757434	chr11:32792784-32958609	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
4	esv34742	chr11:32796092-33004024	Weak transcription Strong transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
5	esv2753057	chr11:32796124-33061724	Enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases
6	esv2753743	chr11:32796124-33084924	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases
7	nsv897190	chr11:32801921-32951836	Strong transcription Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:32900800-32906200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr11:32905200-32908200	Enhancers	Liver	Liver
3	chr11:32905800-32913400	Weak transcription	Right Atrium	heart

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