Variant report

Variant	rs34004096
Chromosome Location	chr8:2099787-2099788
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10099055	0.94[ASN][1000 genomes]
rs10103035	0.94[ASN][1000 genomes]
rs10503170	0.98[ASN][1000 genomes]
rs13248197	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13260459	0.85[ASN][1000 genomes]
rs13264265	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13264810	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13265701	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13267188	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13270863	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13271873	0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs13272507	0.99[ASN][1000 genomes]
rs13275233	0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17684913	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17752076	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17752149	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17752155	0.97[ASN][1000 genomes]
rs17752179	0.83[ASN][1000 genomes]
rs17854780	0.85[ASN][1000 genomes]
rs2280905	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28788232	0.87[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs28862980	0.87[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs28885149	0.87[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs28891159	0.87[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs34039811	0.88[ASN][1000 genomes]
rs34547976	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35077455	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35241794	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35366685	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35402008	0.99[ASN][1000 genomes]
rs35862926	0.98[ASN][1000 genomes]
rs3779814	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3779816	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3779818	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3779819	0.88[ASN][1000 genomes]
rs3824167	0.96[ASN][1000 genomes]
rs4262342	0.86[ASN][1000 genomes]
rs4363227	0.85[ASN][1000 genomes]
rs4535761	0.87[ASN][1000 genomes]
rs4568639	0.81[ASN][1000 genomes]
rs4599837	0.86[ASN][1000 genomes]
rs5023999	0.87[ASN][1000 genomes]
rs55806773	0.86[ASN][1000 genomes]
rs55955938	0.87[ASN][1000 genomes]
rs62480003	0.87[ASN][1000 genomes]
rs62501379	0.95[ASN][1000 genomes]
rs62501403	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs66538145	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs66746701	0.97[ASN][1000 genomes]
rs67313412	0.97[ASN][1000 genomes]
rs67371404	0.95[ASN][1000 genomes]
rs67489990	0.97[ASN][1000 genomes]
rs67769214	0.95[ASN][1000 genomes]
rs68035375	0.97[ASN][1000 genomes]
rs68053310	0.97[ASN][1000 genomes]
rs68123268	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs71499062	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73169419	0.81[ASN][1000 genomes]
rs73169431	0.85[ASN][1000 genomes]
rs73169432	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73169434	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73169439	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73169447	0.96[ASN][1000 genomes]
rs73169450	0.96[ASN][1000 genomes]
rs73169451	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889712	chr8:1591412-2337777	Weak transcription Active TSS Strong transcription Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:2076000-2109600	Weak transcription	Right Atrium	heart
2	chr8:2093000-2103400	Weak transcription	Pancreas	Pancrea
3	chr8:2093000-2107200	Weak transcription	Gastric	stomach
4	chr8:2094000-2122400	Weak transcription	Right Ventricle	heart
5	chr8:2095400-2100800	Weak transcription	Fetal Thymus	thymus
6	chr8:2095400-2103200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr8:2096400-2101600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr8:2096800-2101000	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr8:2096800-2102800	Weak transcription	Left Ventricle	heart
10	chr8:2097600-2104000	Weak transcription	Fetal Muscle Leg	muscle
11	chr8:2099000-2101000	Strong transcription	Skeletal Muscle Female	skeletal muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links