Variant report

Variant	rs35241794
Chromosome Location	chr8:2094088-2094089
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:2088536..2090295-chr8:2090683..2094194,3	K562	blood:
2	chr8:2092603..2094179-chr8:2096997..2098830,2	K562	blood:
3	chr8:2083371..2086382-chr8:2092735..2096107,4	K562	blood:

Variant related genes	Relation type
ENSG00000036448	Chromatin interaction

Extended variants
information (count: 66 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10099055	0.92[ASN][1000 genomes]
rs10103035	0.92[ASN][1000 genomes]
rs10503170	1.00[ASN][1000 genomes]
rs1063523	0.81[ASN][1000 genomes]
rs13248197	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13260459	0.87[ASN][1000 genomes]
rs13264265	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13264810	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13265701	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13267188	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13270863	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13271873	0.94[ASN][1000 genomes]
rs13272507	0.97[ASN][1000 genomes]
rs13275233	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17684913	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17752076	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17752149	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17752155	0.87[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs17752179	0.85[ASN][1000 genomes]
rs17854780	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2280905	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28862980	0.84[ASN][1000 genomes]
rs28885149	0.84[ASN][1000 genomes]
rs28891159	0.85[ASN][1000 genomes]
rs34004096	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34039811	0.90[ASN][1000 genomes]
rs34547976	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35077455	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35366685	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35402008	0.97[ASN][1000 genomes]
rs35862926	1.00[ASN][1000 genomes]
rs3779814	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3779816	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3779818	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3779819	0.88[ASN][1000 genomes]
rs3824167	0.98[ASN][1000 genomes]
rs4262342	0.86[ASN][1000 genomes]
rs4363227	0.87[ASN][1000 genomes]
rs4535761	0.87[ASN][1000 genomes]
rs4568639	0.81[ASN][1000 genomes]
rs4599837	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs5023999	0.87[ASN][1000 genomes]
rs55806773	0.86[ASN][1000 genomes]
rs55955938	0.87[ASN][1000 genomes]
rs62480003	0.87[ASN][1000 genomes]
rs62501379	0.97[ASN][1000 genomes]
rs62501403	0.92[ASN][1000 genomes]
rs66538145	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs66746701	0.87[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs67313412	0.87[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs67371404	0.87[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs67489990	0.87[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs67769214	0.97[ASN][1000 genomes]
rs68035375	0.87[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs68053310	0.87[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs68123268	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs71499062	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73169419	0.83[ASN][1000 genomes]
rs73169431	0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs73169432	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73169434	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73169439	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73169447	0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs73169450	0.98[ASN][1000 genomes]
rs73169451	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889712	chr8:1591412-2337777	Weak transcription Active TSS Strong transcription Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs35241794	MYOM2	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:2076000-2094400	Weak transcription	Brain Hippocampus Middle	brain
2	chr8:2076000-2109600	Weak transcription	Right Atrium	heart
3	chr8:2076400-2097800	Strong transcription	Skeletal Muscle Female	skeletal muscle
4	chr8:2076600-2096800	Strong transcription	Skeletal Muscle Male	skeletal muscle
5	chr8:2079400-2094600	Weak transcription	Fetal Heart	heart
6	chr8:2079400-2095800	Enhancers	Primary T helper cells fromperipheralblood	blood
7	chr8:2080800-2096800	Strong transcription	Left Ventricle	heart
8	chr8:2085400-2094600	Weak transcription	Brain Cingulate Gyrus	brain
9	chr8:2086200-2096800	Weak transcription	Spleen	Spleen
10	chr8:2086400-2094200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr8:2087200-2095400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
12	chr8:2087400-2095400	Enhancers	Primary T cells from cord blood	blood
13	chr8:2088000-2094200	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr8:2089400-2095400	Weak transcription	Ovary	ovary
15	chr8:2090200-2096400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
16	chr8:2090200-2096600	Weak transcription	Psoas Muscle	Psoas
17	chr8:2090400-2095000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
18	chr8:2090400-2096400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
19	chr8:2091000-2095400	Enhancers	Fetal Thymus	thymus
20	chr8:2091000-2095600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
21	chr8:2092400-2095400	Enhancers	Fetal Brain Male	brain
22	chr8:2092800-2095000	Enhancers	Cortex derived primary cultured neurospheres	brain
23	chr8:2093000-2094600	Weak transcription	Stomach Smooth Muscle	stomach
24	chr8:2093000-2095400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr8:2093000-2096600	Weak transcription	Fetal Muscle Trunk	muscle
26	chr8:2093000-2103400	Weak transcription	Pancreas	Pancrea
27	chr8:2093000-2107200	Weak transcription	Gastric	stomach
28	chr8:2093200-2098400	Weak transcription	Fetal Stomach	stomach
29	chr8:2093400-2094200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr8:2093400-2094600	Weak transcription	Brain Inferior Temporal Lobe	brain
31	chr8:2093600-2095000	Enhancers	Primary T cells fromperipheralblood	blood
32	chr8:2093600-2095200	Enhancers	Primary T killer memory cells from peripheral blood	blood
33	chr8:2093600-2095400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
34	chr8:2093600-2095400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
35	chr8:2093600-2096200	Weak transcription	Fetal Muscle Leg	muscle
36	chr8:2093800-2095400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
37	chr8:2093800-2095600	Enhancers	Primary T helper naive cells from peripheral blood	blood
38	chr8:2093800-2096200	Enhancers	Primary T helper cells PMA-I stimulated	--
39	chr8:2093800-2096200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
40	chr8:2094000-2122400	Weak transcription	Right Ventricle	heart

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