Variant report

Variant	rs34004301
Chromosome Location	chr11:63257789-63257790
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs56061107	0.95[AFR][1000 genomes]
rs58268717	0.82[AFR][1000 genomes]
rs59379252	0.86[AFR][1000 genomes]
rs60365863	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051171	chr11:62987064-63835715	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
2	nsv468588	chr11:63233363-63320239	Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv555179	chr11:63233363-63320239	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv972926	chr11:63235663-63258845	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	esv3364622	chr11:63247425-63274716	Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:63256000-63257800	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr11:63256600-63257800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr11:63256600-63258000	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr11:63256800-63257800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr11:63256800-63257800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr11:63256800-63258200	Enhancers	Brain Germinal Matrix	brain
7	chr11:63257000-63258000	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
8	chr11:63257000-63258000	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
9	chr11:63257200-63258000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr11:63257200-63258000	Bivalent Enhancer	Fetal Muscle Leg	muscle
11	chr11:63257200-63258200	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
12	chr11:63257200-63258600	Flanking Active TSS	HSMMtube	muscle
13	chr11:63257400-63257800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr11:63257400-63257800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr11:63257400-63257800	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr11:63257400-63257800	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr11:63257400-63257800	Enhancers	Right Atrium	heart
18	chr11:63257400-63257800	Flanking Active TSS	Stomach Smooth Muscle	stomach
19	chr11:63257400-63258000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr11:63257400-63258000	Enhancers	Breast Myoepithelial Primary Cells	Breast
21	chr11:63257400-63258000	Bivalent Enhancer	Primary hematopoietic stem cells	blood
22	chr11:63257400-63258000	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr11:63257400-63258000	Enhancers	Lung	lung
24	chr11:63257400-63258000	Enhancers	Ovary	ovary
25	chr11:63257400-63258000	Enhancers	Skeletal Muscle Male	skeletal muscle
26	chr11:63257400-63258200	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr11:63257400-63258200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr11:63257400-63258200	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
29	chr11:63257400-63258200	Enhancers	Gastric	stomach
30	chr11:63257400-63258200	Enhancers	Left Ventricle	heart
31	chr11:63257400-63258200	Enhancers	Right Ventricle	heart
32	chr11:63257400-63258200	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
33	chr11:63257400-63258200	Bivalent Enhancer	NH-A	brain
34	chr11:63257400-63258400	Enhancers	Placenta	Placenta
35	chr11:63257400-63259000	Active TSS	ES-I3 Cell Line	embryonic stem cell
36	chr11:63257400-63259000	Active TSS	Rectal Smooth Muscle	rectum
37	chr11:63257400-63259800	Flanking Active TSS	Adipose Nuclei	Adipose
38	chr11:63257600-63257800	Flanking Active TSS	H1 Cell Line	embryonic stem cell
39	chr11:63257600-63257800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr11:63257600-63257800	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
41	chr11:63257600-63257800	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
42	chr11:63257600-63257800	Enhancers	Duodenum Smooth Muscle	Duodenum
43	chr11:63257600-63257800	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
44	chr11:63257600-63257800	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
45	chr11:63257600-63258000	Flanking Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
46	chr11:63257600-63258000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr11:63257600-63258000	Enhancers	Brain Angular Gyrus	brain
48	chr11:63257600-63258000	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
49	chr11:63257600-63258000	Flanking Active TSS	Colon Smooth Muscle	Colon
50	chr11:63257600-63258000	Active TSS	Hela-S3	cervix

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