Variant report

Variant	rs58268717
Chromosome Location	chr11:63260100-63260101
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs34004301	0.82[AFR][1000 genomes]
rs56061107	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051171	chr11:62987064-63835715	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
2	nsv468588	chr11:63233363-63320239	Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv555179	chr11:63233363-63320239	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	esv3364622	chr11:63247425-63274716	Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:63258000-63260800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr11:63259000-63262200	Weak transcription	Pancreas	Pancrea
3	chr11:63259200-63260200	Enhancers	HepG2	liver
4	chr11:63259200-63262200	Weak transcription	Gastric	stomach
5	chr11:63259400-63260200	Enhancers	Colon Smooth Muscle	Colon
6	chr11:63259400-63260200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr11:63259400-63260200	Enhancers	Fetal Thymus	thymus
8	chr11:63259400-63262000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr11:63259400-63262800	Weak transcription	Fetal Muscle Trunk	muscle
10	chr11:63259600-63260200	Bivalent Enhancer	Primary hematopoietic stem cells	blood
11	chr11:63259600-63261400	Weak transcription	Liver	Liver
12	chr11:63259800-63260200	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr11:63259800-63260600	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr11:63259800-63261400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr11:63259800-63261600	Weak transcription	Adipose Nuclei	Adipose
16	chr11:63259800-63265000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr11:63260000-63260200	Enhancers	Aorta	Aorta
18	chr11:63260000-63262200	Weak transcription	Stomach Smooth Muscle	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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