Variant report

Variant	rs34004972
Chromosome Location	chr6:78591133-78591134
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs1033142	0.99[EUR][1000 genomes]
rs12524278	0.88[EUR][1000 genomes]
rs12526572	0.90[EUR][1000 genomes]
rs12526967	0.91[EUR][1000 genomes]
rs12528266	0.84[EUR][1000 genomes]
rs12665272	0.91[EUR][1000 genomes]
rs13199793	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13204625	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13219006	0.99[EUR][1000 genomes]
rs13219696	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1877532	0.93[EUR][1000 genomes]
rs34107489	0.91[EUR][1000 genomes]
rs34175887	0.88[EUR][1000 genomes]
rs34515535	0.91[EUR][1000 genomes]
rs34990853	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35472480	0.87[EUR][1000 genomes]
rs35960657	0.82[EUR][1000 genomes]
rs35989063	0.99[EUR][1000 genomes]
rs36042013	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4272185	0.97[EUR][1000 genomes]
rs4280930	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4706658	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4708369	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4708370	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6454004	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6454009	0.82[AFR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs67444686	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6911385	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71563070	0.93[EUR][1000 genomes]
rs71563073	0.93[EUR][1000 genomes]
rs71563079	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7743545	0.86[AFR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7750933	0.81[ASN][1000 genomes]
rs7753042	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7758364	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7761942	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9341700	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9341701	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9343685	0.86[EUR][1000 genomes]
rs9350725	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9352524	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9359299	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9361281	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9361292	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9361293	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9361299	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9448209	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028259	chr6:78059491-78709871	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv538325	chr6:78059491-78709871	Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv603812	chr6:78336806-78646748	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1016961	chr6:78352231-79003866	ZNF genes & repeats Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv538326	chr6:78352231-79003866	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv949682	chr6:78355600-79002515	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv886226	chr6:78484787-78718367	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv428486	chr6:78519436-78693965	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	esv3693356	chr6:78534702-78597728	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
10	nsv886227	chr6:78554711-78718367	Enhancers Active TSS Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv886228	chr6:78568478-78749386	Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv830702	chr6:78573698-78717157	Weak transcription Active TSS Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:78589200-78592000	Enhancers	HepG2	liver
2	chr6:78590800-78593200	Weak transcription	HUVEC	blood vessel

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