Variant report

Variant	rs35960657
Chromosome Location	chr15:57246780-57246781
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs1033142	0.83[EUR][1000 genomes]
rs12524278	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12526572	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12526967	0.86[EUR][1000 genomes]
rs12665272	0.86[EUR][1000 genomes]
rs13199793	0.86[EUR][1000 genomes]
rs13204625	0.87[EUR][1000 genomes]
rs13219006	0.83[EUR][1000 genomes]
rs13219696	0.83[EUR][1000 genomes]
rs1877532	0.88[EUR][1000 genomes]
rs34004972	0.82[EUR][1000 genomes]
rs34107489	0.86[EUR][1000 genomes]
rs34175887	0.83[EUR][1000 genomes]
rs34515535	0.86[EUR][1000 genomes]
rs34990853	0.82[EUR][1000 genomes]
rs35472480	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35989063	0.83[EUR][1000 genomes]
rs36042013	0.82[EUR][1000 genomes]
rs4272185	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4280930	0.82[EUR][1000 genomes]
rs4706658	0.82[EUR][1000 genomes]
rs4708369	0.86[EUR][1000 genomes]
rs4708370	0.86[EUR][1000 genomes]
rs6454004	0.83[EUR][1000 genomes]
rs6454009	0.84[EUR][1000 genomes]
rs67444686	0.82[EUR][1000 genomes]
rs6911385	0.82[EUR][1000 genomes]
rs71563070	0.88[EUR][1000 genomes]
rs71563073	0.88[EUR][1000 genomes]
rs71563079	0.82[EUR][1000 genomes]
rs7743545	0.84[EUR][1000 genomes]
rs7758364	0.83[EUR][1000 genomes]
rs7761942	0.82[EUR][1000 genomes]
rs9341700	0.84[EUR][1000 genomes]
rs9341701	0.84[EUR][1000 genomes]
rs9350725	0.83[EUR][1000 genomes]
rs9352524	0.83[EUR][1000 genomes]
rs9359299	0.82[EUR][1000 genomes]
rs9361281	0.83[EUR][1000 genomes]
rs9361292	0.83[EUR][1000 genomes]
rs9361293	0.83[EUR][1000 genomes]
rs9361299	0.84[EUR][1000 genomes]
rs9448209	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042486	chr15:57094598-57505992	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv542393	chr15:57115116-57341363	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv904250	chr15:57225766-57294085	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv1052052	chr15:57232111-57344561	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	nsv542394	chr15:57232111-57344561	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	nsv904251	chr15:57241970-57575916	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57212400-57256000	Weak transcription	Pancreas	Pancrea
2	chr15:57213200-57256000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr15:57222600-57250200	Weak transcription	NH-A	brain
4	chr15:57222800-57255000	Weak transcription	HMEC	breast
5	chr15:57224600-57248600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr15:57225000-57249000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr15:57227000-57249800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr15:57227600-57260600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr15:57228200-57260600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr15:57229400-57255800	Weak transcription	Fetal Stomach	stomach
11	chr15:57232000-57256000	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr15:57233000-57250200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr15:57234400-57249000	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr15:57236800-57249800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr15:57238200-57249000	Weak transcription	HSMM	muscle
16	chr15:57238400-57247800	Weak transcription	NHDF-Ad	bronchial
17	chr15:57238400-57249000	Weak transcription	Primary hematopoietic stem cells	blood
18	chr15:57238400-57256200	Weak transcription	K562	blood
19	chr15:57238600-57248200	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr15:57239600-57250200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr15:57240200-57249200	Weak transcription	Psoas Muscle	Psoas
22	chr15:57240200-57250200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr15:57240200-57250200	Weak transcription	Left Ventricle	heart
24	chr15:57241000-57249000	Weak transcription	HUES48 Cell Line	embryonic stem cell
25	chr15:57241000-57255600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr15:57241200-57251600	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr15:57241200-57254400	Weak transcription	NHLF	lung
28	chr15:57241600-57249200	Weak transcription	Osteobl	bone
29	chr15:57241800-57247200	Weak transcription	Primary T helper cells PMA-I stimulated	--
30	chr15:57242200-57247000	Weak transcription	Fetal Lung	lung
31	chr15:57242200-57249800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
32	chr15:57242200-57251400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr15:57242200-57256000	Weak transcription	Ovary	ovary
34	chr15:57242400-57249200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr15:57242400-57250000	Weak transcription	Thymus	Thymus
36	chr15:57242600-57252000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr15:57244000-57255800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
38	chr15:57244200-57247400	Weak transcription	Primary T cells fromperipheralblood	blood
39	chr15:57244200-57249200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr15:57244200-57249200	Weak transcription	Dnd41	blood
41	chr15:57244200-57257800	Weak transcription	Fetal Intestine Small	intestine
42	chr15:57246600-57246800	Strong transcription	Fetal Thymus	thymus

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