Variant report

Variant	rs34009190
Chromosome Location	chr3:146266958-146266959
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:146261118..146264072-chr3:146264096..146268231,4	K562	blood:

Variant related genes	Relation type
ENSG00000188313	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1061307	0.94[ASN][1000 genomes]
rs13064509	0.85[AFR][1000 genomes]
rs13080178	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13099587	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34598718	0.82[ASN][1000 genomes]
rs35766154	0.91[ASN][1000 genomes]
rs3773521	0.82[ASN][1000 genomes]
rs60601385	0.82[ASN][1000 genomes]
rs66639703	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6799809	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7625626	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7625713	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7647634	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9815834	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9850802	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9880682	0.82[ASN][1000 genomes]
rs9883058	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014493	chr3:146255594-146288414	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:146262800-146267600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
2	chr3:146262800-146268600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr3:146263000-146267800	Weak transcription	Primary T helper cells PMA-I stimulated	--
4	chr3:146263200-146267000	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr3:146263200-146267000	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr3:146263200-146267200	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr3:146263200-146267400	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr3:146263200-146267400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr3:146263200-146267400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr3:146263200-146267400	Weak transcription	Monocytes-CD14+_RO01746	blood
11	chr3:146263200-146267600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr3:146263200-146267600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr3:146263200-146267600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr3:146263200-146267600	Weak transcription	Liver	Liver
15	chr3:146263200-146267800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
16	chr3:146263200-146268000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr3:146263200-146268000	Weak transcription	Osteobl	bone
18	chr3:146263200-146268200	Weak transcription	A549	lung
19	chr3:146263200-146268800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr3:146263200-146268800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr3:146263200-146270800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr3:146263400-146267400	Weak transcription	Dnd41	blood
23	chr3:146263400-146267600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr3:146263400-146267600	Weak transcription	Primary monocytes fromperipheralblood	blood
25	chr3:146263400-146267600	Weak transcription	Primary B cells from cord blood	blood
26	chr3:146263400-146267600	Weak transcription	Muscle Satellite Cultured Cells	--
27	chr3:146263400-146267600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr3:146263400-146267800	Weak transcription	Primary hematopoietic stem cells	blood
29	chr3:146263400-146267800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
30	chr3:146263400-146267800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr3:146263400-146267800	Weak transcription	NHDF-Ad	bronchial
32	chr3:146263400-146268600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr3:146263600-146267000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
34	chr3:146263600-146267600	Weak transcription	Duodenum Mucosa	Duodenum
35	chr3:146263800-146267600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
36	chr3:146263800-146267800	Weak transcription	Duodenum Smooth Muscle	Duodenum
37	chr3:146263800-146267800	Weak transcription	NHLF	lung
38	chr3:146263800-146271800	Weak transcription	K562	blood
39	chr3:146264000-146267200	Weak transcription	Primary neutrophils fromperipheralblood	blood
40	chr3:146265000-146267800	Weak transcription	Primary T helper cells fromperipheralblood	blood
41	chr3:146265000-146268600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr3:146265200-146267600	Weak transcription	NHEK	skin
43	chr3:146265200-146268000	Weak transcription	Placenta Amnion	Placenta Amnion
44	chr3:146265600-146268000	Weak transcription	HMEC	breast
45	chr3:146265600-146269400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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