Variant report

Variant	rs35766154
Chromosome Location	chr3:146275555-146275556
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1061307	0.91[ASN][1000 genomes]
rs13080178	0.94[ASN][1000 genomes]
rs13099587	0.94[ASN][1000 genomes]
rs34009190	0.91[ASN][1000 genomes]
rs34598718	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34954761	0.90[AFR][1000 genomes]
rs3773521	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs60601385	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs66639703	0.82[ASN][1000 genomes]
rs6799809	0.94[ASN][1000 genomes]
rs73155202	0.85[AFR][1000 genomes]
rs7625626	0.94[ASN][1000 genomes]
rs7625713	0.94[ASN][1000 genomes]
rs7647634	0.94[ASN][1000 genomes]
rs9815834	0.82[ASN][1000 genomes]
rs9832352	0.80[AFR][1000 genomes]
rs9850802	0.94[ASN][1000 genomes]
rs9880682	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9883058	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014493	chr3:146255594-146288414	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	n/a
2	nsv432489	chr3:146271370-146323969	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:146270000-146284000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:146272200-146275600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr3:146272400-146275600	Weak transcription	Primary B cells from cord blood	blood
4	chr3:146275200-146275600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr3:146275200-146276400	Enhancers	Monocytes-CD14+_RO01746	blood
6	chr3:146275400-146275800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
7	chr3:146275400-146277400	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr3:146275400-146277400	Enhancers	Primary hematopoietic stem cells short term culture	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links