Variant report

Variant	rs34022301
Chromosome Location	chr9:137004092-137004093
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr9:137003273-137004552	HepG2	liver:	n/a	n/a
2	POLR2A	chr9:137004082-137004147	HepG2	liver:	n/a	n/a
3	POLR2A	chr9:137003617-137004304	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr9:136932690..136935080-chr9:137003441..137005032,2	MCF-7	breast:
2	chr9:136928987..136935981-chr9:136998799..137005312,16	MCF-7	breast:
3	chr9:137003283..137007180-chr9:137027026..137030232,3	K562	blood:

Variant related genes	Relation type
WDR5	TF binding region
ENSG00000273249	TF binding region
ENSG00000221676	Chromatin interaction
ENSG00000169925	Chromatin interaction

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs28377785	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28399690	1.00[AFR][1000 genomes]
rs28421319	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28425680	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28434714	1.00[EUR][1000 genomes]
rs28436125	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28452481	1.00[AFR][1000 genomes]
rs28488634	1.00[EUR][1000 genomes]
rs28538491	1.00[EUR][1000 genomes]
rs28540578	1.00[EUR][1000 genomes]
rs28562287	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28562957	1.00[AFR][1000 genomes]
rs28565058	1.00[EUR][1000 genomes]
rs28585632	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28593202	1.00[EUR][1000 genomes]
rs28594106	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28595141	1.00[EUR][1000 genomes]
rs28626085	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28626885	1.00[EUR][1000 genomes]
rs28637300	1.00[EUR][1000 genomes]
rs28654988	1.00[EUR][1000 genomes]
rs28657441	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28673958	1.00[EUR][1000 genomes]
rs28687115	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28687158	0.96[EUR][1000 genomes]
rs28701738	1.00[EUR][1000 genomes]
rs28705949	1.00[EUR][1000 genomes]
rs28708401	1.00[AFR][1000 genomes]
rs28715994	1.00[EUR][1000 genomes]
rs28733640	1.00[EUR][1000 genomes]
rs28756160	1.00[EUR][1000 genomes]
rs28759300	1.00[EUR][1000 genomes]
rs34031108	1.00[EUR][1000 genomes]
rs34062061	1.00[EUR][1000 genomes]
rs34169579	1.00[EUR][1000 genomes]
rs34194763	1.00[AFR][1000 genomes]
rs34259931	0.89[EUR][1000 genomes]
rs34350861	1.00[EUR][1000 genomes]
rs34515929	1.00[EUR][1000 genomes]
rs34523253	1.00[EUR][1000 genomes]
rs34546899	1.00[AFR][1000 genomes]
rs34856382	1.00[EUR][1000 genomes]
rs34929179	1.00[AFR][1000 genomes]
rs35158191	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35237188	1.00[EUR][1000 genomes]
rs35370793	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35420166	1.00[EUR][1000 genomes]
rs35504753	1.00[AFR][1000 genomes]
rs35511305	1.00[AFR][1000 genomes]
rs35874066	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35924689	1.00[AFR][1000 genomes]
rs35962164	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35985804	0.92[EUR][1000 genomes]
rs36029182	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71483222	1.00[AFR][1000 genomes]
rs71505283	1.00[AFR][1000 genomes]
rs71505284	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894138	chr9:136839840-137093168	Strong transcription Genic enhancers Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv825148	chr9:136848471-137025632	Flanking Bivalent TSS/Enh Active TSS Strong transcription Weak transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv1048571	chr9:136872166-137265444	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
4	nsv894148	chr9:136874066-137093168	Enhancers Strong transcription Weak transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
5	nsv894151	chr9:136887757-137397609	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
6	nsv6751	chr9:136967475-137007131	Active TSS Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	nsv894155	chr9:136969689-137364866	Active TSS Enhancers Bivalent Enhancer Genic enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	43 gene(s)	inside rSNPs	diseases
8	esv1793302	chr9:136990615-137390602	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	44 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:137001600-137004600	Flanking Active TSS	Stomach Smooth Muscle	stomach
2	chr9:137001800-137004400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr9:137002000-137004800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr9:137002200-137004200	Enhancers	Fetal Heart	heart
5	chr9:137002200-137004400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
6	chr9:137002400-137004200	Enhancers	Gastric	stomach
7	chr9:137002400-137004200	Enhancers	Lung	lung
8	chr9:137002400-137004400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr9:137002400-137004400	Enhancers	Primary T helper naive cells from peripheral blood	blood
10	chr9:137002400-137004400	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr9:137002400-137004400	Enhancers	Small Intestine	intestine
12	chr9:137002400-137004600	Enhancers	Primary T cells fromperipheralblood	blood
13	chr9:137002400-137004600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
14	chr9:137002400-137004600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
15	chr9:137002400-137004600	Enhancers	Esophagus	oesophagus
16	chr9:137002400-137004600	Enhancers	Ovary	ovary
17	chr9:137002400-137004600	Enhancers	Sigmoid Colon	Sigmoid Colon
18	chr9:137002400-137004800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
19	chr9:137002400-137004800	Enhancers	Adipose Nuclei	Adipose
20	chr9:137002400-137004800	Enhancers	Left Ventricle	heart
21	chr9:137002400-137005600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr9:137002400-137006400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr9:137002400-137016200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
24	chr9:137002600-137004200	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr9:137002600-137004200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
26	chr9:137002600-137004200	Enhancers	Primary T killer memory cells from peripheral blood	blood
27	chr9:137002600-137004200	Enhancers	Skeletal Muscle Male	skeletal muscle
28	chr9:137002600-137004400	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr9:137002600-137004400	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr9:137002600-137004400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
31	chr9:137002600-137004400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr9:137002600-137004400	Enhancers	Right Ventricle	heart
33	chr9:137002600-137004600	Enhancers	Brain Substantia Nigra	brain
34	chr9:137002600-137004800	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
35	chr9:137002600-137005000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
36	chr9:137002600-137005000	Weak transcription	Primary neutrophils fromperipheralblood	blood
37	chr9:137002600-137005000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
38	chr9:137002600-137005000	Enhancers	Pancreas	Pancrea
39	chr9:137002600-137005200	Genic enhancers	Fetal Intestine Small	intestine
40	chr9:137002600-137005800	Genic enhancers	Fetal Stomach	stomach
41	chr9:137002800-137004200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
42	chr9:137002800-137004600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
43	chr9:137002800-137004800	Enhancers	Colon Smooth Muscle	Colon
44	chr9:137003000-137004200	Genic enhancers	iPS-20b Cell Line	embryonic stem cell
45	chr9:137003000-137004200	Transcr. at gene 5' and 3'	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr9:137003000-137004600	Genic enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr9:137003000-137004600	Enhancers	Brain Inferior Temporal Lobe	brain
48	chr9:137003000-137004600	Enhancers	Right Atrium	heart
49	chr9:137003000-137005200	Weak transcription	K562	blood
50	chr9:137003200-137004200	Genic enhancers	Primary hematopoietic stem cells short term culture	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links