Variant report

Variant	rs34856382
Chromosome Location	chr9:137012032-137012033
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:137011015..137015920-chr9:137017197..137019445,5	K562	blood:
2	chr9:137008996..137010498-chr9:137011020..137012647,2	MCF-7	breast:
3	chr9:137003604..137006629-chr9:137010063..137012650,5	MCF-7	breast:
4	chr9:136999849..137002722-chr9:137011854..137015111,4	MCF-7	breast:
5	chr9:137011848..137014856-chr9:137016044..137018651,3	MCF-7	breast:
6	chr9:137010107..137012068-chr9:137012817..137015533,2	K562	blood:

Variant related genes	Relation type
ENSG00000196363	Chromatin interaction
ENSG00000273249	Chromatin interaction

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs28377785	1.00[EUR][1000 genomes]
rs28421319	1.00[EUR][1000 genomes]
rs28425680	1.00[EUR][1000 genomes]
rs28434714	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28436125	1.00[EUR][1000 genomes]
rs28488634	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28538491	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28540578	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28562287	1.00[EUR][1000 genomes]
rs28565058	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28585632	1.00[EUR][1000 genomes]
rs28593202	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28594106	1.00[EUR][1000 genomes]
rs28595141	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28626085	1.00[EUR][1000 genomes]
rs28626885	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28637300	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28654988	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28657441	1.00[EUR][1000 genomes]
rs28673958	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28687115	1.00[EUR][1000 genomes]
rs28687158	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28701738	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28705949	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28712382	1.00[CEU][hapmap]
rs28715994	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28733640	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28740804	0.95[AFR][1000 genomes]
rs28756160	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28758854	1.00[CEU][hapmap]
rs28759300	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34022301	1.00[EUR][1000 genomes]
rs34031108	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34062061	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34169579	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34259931	0.99[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34350861	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34515929	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34523253	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34775966	0.83[LWK][hapmap];0.89[MKK][hapmap]
rs35158191	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs35237188	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35370793	1.00[EUR][1000 genomes]
rs35420166	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35962164	1.00[EUR][1000 genomes]
rs35985804	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs36029182	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894138	chr9:136839840-137093168	Strong transcription Genic enhancers Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv825148	chr9:136848471-137025632	Flanking Bivalent TSS/Enh Active TSS Strong transcription Weak transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv1048571	chr9:136872166-137265444	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
4	nsv894148	chr9:136874066-137093168	Enhancers Strong transcription Weak transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
5	nsv894151	chr9:136887757-137397609	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
6	nsv894155	chr9:136969689-137364866	Active TSS Enhancers Bivalent Enhancer Genic enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	43 gene(s)	inside rSNPs	diseases
7	esv1793302	chr9:136990615-137390602	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	44 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:137002400-137016200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr9:137003200-137024200	Strong transcription	HUES64 Cell Line	embryonic stem cell
3	chr9:137003600-137024800	Strong transcription	H9 Cell Line	embryonic stem cell
4	chr9:137004000-137017400	Strong transcription	HUVEC	blood vessel
5	chr9:137004000-137024000	Strong transcription	A549	lung
6	chr9:137004000-137024800	Strong transcription	Primary T cells from cord blood	blood
7	chr9:137004200-137015800	Weak transcription	Fetal Heart	heart
8	chr9:137004200-137016000	Strong transcription	HUES6 Cell Line	embryonic stem cell
9	chr9:137004200-137024400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
10	chr9:137004200-137024800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
11	chr9:137004200-137024800	Strong transcription	Primary monocytes fromperipheralblood	blood
12	chr9:137004200-137025000	Strong transcription	HUES48 Cell Line	embryonic stem cell
13	chr9:137004200-137025000	Strong transcription	Monocytes-CD14+_RO01746	blood
14	chr9:137004200-137026000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
15	chr9:137004400-137013600	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr9:137004400-137014200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr9:137004400-137024800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr9:137004400-137025800	Strong transcription	H1 Cell Line	embryonic stem cell
19	chr9:137004400-137025800	Strong transcription	Fetal Thymus	thymus
20	chr9:137004600-137015000	Strong transcription	Duodenum Mucosa	Duodenum
21	chr9:137004600-137016200	Strong transcription	Spleen	Spleen
22	chr9:137004600-137024400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
23	chr9:137004600-137024600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
24	chr9:137004600-137024800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr9:137004600-137024800	Strong transcription	Gastric	stomach
26	chr9:137004600-137025000	Strong transcription	Placenta Amnion	Placenta Amnion
27	chr9:137004600-137025000	Strong transcription	Dnd41	blood
28	chr9:137004600-137025800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr9:137004600-137026000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr9:137004600-137026200	Strong transcription	Fetal Intestine Large	intestine
31	chr9:137004600-137026200	Strong transcription	Hela-S3	cervix
32	chr9:137004600-137026400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr9:137004800-137024200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
34	chr9:137004800-137025000	Strong transcription	Primary T cells fromperipheralblood	blood
35	chr9:137004800-137025000	Strong transcription	Fetal Brain Female	brain
36	chr9:137004800-137025600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
37	chr9:137004800-137026400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr9:137004800-137026400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
39	chr9:137005000-137015200	Strong transcription	NHLF	lung
40	chr9:137005000-137017200	Strong transcription	Osteobl	bone
41	chr9:137005000-137022600	Strong transcription	Brain Hippocampus Middle	brain
42	chr9:137005000-137022600	Strong transcription	Brain Inferior Temporal Lobe	brain
43	chr9:137005000-137023800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr9:137005000-137024000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr9:137005000-137024000	Strong transcription	Primary neutrophils fromperipheralblood	blood
46	chr9:137005000-137024000	Strong transcription	Rectal Mucosa Donor 31	rectum
47	chr9:137005000-137024200	Strong transcription	Primary T helper cells PMA-I stimulated	--
48	chr9:137005000-137024400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
49	chr9:137005000-137024400	Strong transcription	Rectal Smooth Muscle	rectum
50	chr9:137005000-137024600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links