Variant report

Variant	rs34025755
Chromosome Location	chr6:161591147-161591148
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:161590670..161592878-chr6:161605980..161608609,2	MCF-7	breast:
2	chr6:161590079..161592412-chr6:161674654..161677002,2	K562	blood:
3	chr6:161495917..161498579-chr6:161589322..161591703,2	K562	blood:
4	chr6:161588978..161591951-chr6:161662641..161667563,4	K562	blood:
5	chr6:161590074..161592745-chr6:161601272..161602964,2	K562	blood:
6	chr6:161413545..161416445-chr6:161589800..161592180,2	K562	blood:
7	chr6:161410889..161414206-chr6:161590814..161593472,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000272841	Chromatin interaction
ENSG00000085511	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10455875	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12190406	1.00[ASN][1000 genomes]
rs12199314	1.00[ASN][1000 genomes]
rs12203149	1.00[ASN][1000 genomes]
rs12203960	1.00[ASN][1000 genomes]
rs12208953	1.00[ASN][1000 genomes]
rs13196735	1.00[ASN][1000 genomes]
rs13197494	1.00[ASN][1000 genomes]
rs1474915	1.00[ASN][1000 genomes]
rs2064719	1.00[ASN][1000 genomes]
rs2277092	1.00[ASN][1000 genomes]
rs6901905	1.00[ASN][1000 genomes]
rs6902571	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71565794	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71565795	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73786015	1.00[ASN][1000 genomes]
rs7748827	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886817	chr6:161371621-161846654	Strong transcription Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	esv3381361	chr6:161373617-161864101	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:161574600-161592400	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr6:161575600-161593400	Weak transcription	Esophagus	oesophagus
3	chr6:161584200-161591200	Weak transcription	Thymus	Thymus
4	chr6:161584200-161591800	Weak transcription	Right Ventricle	heart
5	chr6:161584800-161591200	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr6:161585000-161591600	Weak transcription	Fetal Intestine Small	intestine
7	chr6:161585600-161591200	Weak transcription	Ovary	ovary
8	chr6:161585600-161626000	Weak transcription	Right Atrium	heart
9	chr6:161586800-161591200	Weak transcription	Primary hematopoietic stem cells	blood
10	chr6:161587000-161592200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr6:161587400-161592000	Enhancers	H1 Cell Line	embryonic stem cell
12	chr6:161587400-161599600	Weak transcription	Spleen	Spleen
13	chr6:161587400-161607000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr6:161587600-161591200	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr6:161587600-161592200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr6:161587600-161594000	Weak transcription	Aorta	Aorta
17	chr6:161587800-161592000	Enhancers	Cortex derived primary cultured neurospheres	brain
18	chr6:161587800-161592200	Enhancers	Brain Hippocampus Middle	brain
19	chr6:161587800-161592400	Enhancers	iPS-20b Cell Line	embryonic stem cell
20	chr6:161588000-161599800	Weak transcription	Primary T cells from cord blood	blood
21	chr6:161588200-161591600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr6:161588600-161591400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
23	chr6:161588600-161592200	Enhancers	Brain Substantia Nigra	brain
24	chr6:161588600-161592600	Enhancers	Brain Cingulate Gyrus	brain
25	chr6:161588800-161591400	Enhancers	NH-A	brain
26	chr6:161588800-161591800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr6:161589000-161592000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr6:161589200-161591200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr6:161589200-161591200	Enhancers	Osteobl	bone
30	chr6:161589200-161591400	Enhancers	Muscle Satellite Cultured Cells	--
31	chr6:161589200-161591400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr6:161589200-161591400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr6:161589200-161591400	Enhancers	HUVEC	blood vessel
34	chr6:161589200-161591400	Enhancers	NHEK	skin
35	chr6:161589200-161591800	Enhancers	NHLF	lung
36	chr6:161589200-161592000	Enhancers	Fetal Muscle Trunk	muscle
37	chr6:161589200-161592000	Enhancers	NHDF-Ad	bronchial
38	chr6:161589200-161592200	Enhancers	Brain Inferior Temporal Lobe	brain
39	chr6:161589200-161592200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
40	chr6:161589400-161591400	Enhancers	Fetal Brain Female	brain
41	chr6:161589400-161592200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
42	chr6:161589400-161592200	Enhancers	Brain Anterior Caudate	brain
43	chr6:161589400-161592200	Enhancers	Fetal Muscle Leg	muscle
44	chr6:161589400-161592600	Enhancers	Brain Angular Gyrus	brain
45	chr6:161589600-161591600	Enhancers	Fetal Heart	heart
46	chr6:161589600-161592600	Enhancers	Primary B cells from peripheral blood	blood
47	chr6:161589800-161592400	Enhancers	Brain Germinal Matrix	brain
48	chr6:161590000-161591600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
49	chr6:161590000-161591800	Weak transcription	HUES48 Cell Line	embryonic stem cell
50	chr6:161590000-161591800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links