Variant report

Variant	rs73786015
Chromosome Location	chr6:161586399-161586400
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:161586142..161588343-chr6:161615417..161617358,2	MCF-7	breast:
2	chr5:34856299..34858295-chr6:161586214..161589019,2	K562	blood:
3	chr6:161585978..161588627-chr6:161656198..161658945,2	K562	blood:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10455875	1.00[ASN][1000 genomes]
rs12190406	1.00[ASN][1000 genomes]
rs12199314	1.00[ASN][1000 genomes]
rs12203149	1.00[ASN][1000 genomes]
rs12203960	1.00[ASN][1000 genomes]
rs12208953	1.00[ASN][1000 genomes]
rs13196735	1.00[ASN][1000 genomes]
rs13197494	1.00[ASN][1000 genomes]
rs1474915	1.00[ASN][1000 genomes]
rs2064719	1.00[ASN][1000 genomes]
rs2277092	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34025755	1.00[ASN][1000 genomes]
rs4547987	0.81[EUR][1000 genomes]
rs4598047	0.81[EUR][1000 genomes]
rs4621614	0.81[EUR][1000 genomes]
rs6901905	1.00[ASN][1000 genomes]
rs6902571	1.00[ASN][1000 genomes]
rs71565794	1.00[ASN][1000 genomes]
rs71565795	1.00[ASN][1000 genomes]
rs73595029	0.81[EUR][1000 genomes]
rs7748827	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886817	chr6:161371621-161846654	Strong transcription Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	esv3381361	chr6:161373617-161864101	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv1030852	chr6:161477750-161589394	Weak transcription Strong transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:161544600-161589600	Weak transcription	Fetal Brain Male	brain
2	chr6:161548400-161590800	Weak transcription	Fetal Thymus	thymus
3	chr6:161549800-161589400	Weak transcription	Primary T helper cells fromperipheralblood	blood
4	chr6:161553800-161586600	Weak transcription	Duodenum Mucosa	Duodenum
5	chr6:161554000-161591000	Weak transcription	Colonic Mucosa	Colon
6	chr6:161555800-161586600	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr6:161558200-161589400	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr6:161559400-161587600	Weak transcription	Fetal Intestine Large	intestine
9	chr6:161563400-161588200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr6:161571200-161587600	Strong transcription	Cortex derived primary cultured neurospheres	brain
11	chr6:161571600-161587400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr6:161574600-161592400	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr6:161575600-161591000	Weak transcription	Gastric	stomach
14	chr6:161575600-161593400	Weak transcription	Esophagus	oesophagus
15	chr6:161578600-161587200	Strong transcription	Fetal Brain Female	brain
16	chr6:161578600-161587600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr6:161578800-161587000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr6:161578800-161587800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
19	chr6:161579000-161587600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr6:161579200-161590200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr6:161579400-161587600	Strong transcription	Fetal Stomach	stomach
22	chr6:161579600-161587000	Strong transcription	Placenta	Placenta
23	chr6:161579600-161587400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr6:161579800-161587400	Strong transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr6:161580000-161588000	Strong transcription	Primary T cells from cord blood	blood
26	chr6:161580200-161587600	Strong transcription	Brain Germinal Matrix	brain
27	chr6:161580400-161587800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr6:161580600-161590800	Weak transcription	Primary monocytes fromperipheralblood	blood
29	chr6:161581400-161587600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr6:161581600-161586800	Genic enhancers	Brain Substantia Nigra	brain
31	chr6:161581800-161587400	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr6:161582400-161587200	Strong transcription	Primary B cells from cord blood	blood
33	chr6:161582600-161591000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
34	chr6:161583200-161587800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr6:161583400-161587200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr6:161583600-161589200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr6:161583600-161589200	Weak transcription	HMEC	breast
38	chr6:161583600-161589200	Weak transcription	NHDF-Ad	bronchial
39	chr6:161583800-161586800	Strong transcription	Primary hematopoietic stem cells	blood
40	chr6:161583800-161587000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
41	chr6:161583800-161590800	Weak transcription	Rectal Smooth Muscle	rectum
42	chr6:161584000-161587000	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr6:161584000-161587400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr6:161584000-161587600	Strong transcription	Duodenum Smooth Muscle	Duodenum
45	chr6:161584000-161587800	Strong transcription	Fetal Muscle Trunk	muscle
46	chr6:161584000-161588200	Weak transcription	Pancreas	Pancrea
47	chr6:161584000-161589200	Weak transcription	Osteobl	bone
48	chr6:161584200-161586800	Strong transcription	Stomach Smooth Muscle	stomach
49	chr6:161584200-161587200	Strong transcription	Monocytes-CD14+_RO01746	blood
50	chr6:161584200-161587800	Strong transcription	Fetal Muscle Leg	muscle

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