Variant report

Variant	rs34027408
Chromosome Location	chr13:86352820-86352821
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 83 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs12583872	0.88[AMR][1000 genomes]
rs12585478	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs12585480	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs12585487	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs1752921	0.80[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs17705118	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs1832287	0.82[AMR][1000 genomes]
rs2987288	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs2987289	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs2987290	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs2987291	0.80[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs34875833	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35377374	0.86[AMR][1000 genomes]
rs35872949	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs588858	0.81[AMR][1000 genomes]
rs589634	0.81[AMR][1000 genomes]
rs590231	0.82[AMR][1000 genomes]
rs590511	0.81[AMR][1000 genomes]
rs590644	0.85[AMR][1000 genomes]
rs591368	0.81[AMR][1000 genomes]
rs591499	0.81[AMR][1000 genomes]
rs592256	0.82[AMR][1000 genomes]
rs592421	0.84[AMR][1000 genomes]
rs593709	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs593725	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs594386	0.84[AMR][1000 genomes]
rs598507	0.81[AMR][1000 genomes]
rs603661	0.81[AMR][1000 genomes]
rs605341	0.81[AMR][1000 genomes]
rs606300	0.81[AMR][1000 genomes]
rs608338	0.83[AMR][1000 genomes]
rs608988	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs609220	0.84[AMR][1000 genomes]
rs609289	0.84[AMR][1000 genomes]
rs621988	0.80[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs622321	0.80[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs622377	0.80[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs623412	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs623794	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs624935	0.82[AMR][1000 genomes]
rs625392	0.81[AMR][1000 genomes]
rs625506	0.81[AMR][1000 genomes]
rs625955	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs627569	0.81[AMR][1000 genomes]
rs632209	0.81[AMR][1000 genomes]
rs634766	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs637726	0.82[AMR][1000 genomes]
rs640570	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs651401	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs652301	0.82[AMR][1000 genomes]
rs652731	0.82[AMR][1000 genomes]
rs654972	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs657037	0.81[AMR][1000 genomes]
rs658265	0.82[AMR][1000 genomes]
rs658322	0.82[AMR][1000 genomes]
rs658400	0.83[AMR][1000 genomes]
rs66539861	0.80[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs666568	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs670101	0.83[AMR][1000 genomes]
rs670363	0.82[AMR][1000 genomes]
rs67108773	0.80[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs67149025	0.84[AMR][1000 genomes]
rs672602	0.82[AMR][1000 genomes]
rs673100	0.81[AMR][1000 genomes]
rs673888	0.82[AMR][1000 genomes]
rs67665326	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs681306	0.83[AMR][1000 genomes]
rs681394	0.82[AMR][1000 genomes]
rs68151721	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs684595	0.82[AMR][1000 genomes]
rs684705	0.81[AMR][1000 genomes]
rs685786	0.81[AMR][1000 genomes]
rs685854	0.82[AMR][1000 genomes]
rs694502	0.81[AMR][1000 genomes]
rs7326290	0.81[AMR][1000 genomes]
rs9566099	0.84[AMR][1000 genomes]
rs9566101	0.83[AMR][1000 genomes]
rs9566104	0.81[AMR][1000 genomes]
rs9575959	0.84[AMR][1000 genomes]
rs9575960	0.84[AMR][1000 genomes]
rs9575961	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037563	chr13:85830511-86414012	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv832668	chr13:86234885-86364254	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:86335000-86372800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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