Variant report

Variant	rs34035285
Chromosome Location	chr5:42226068-42226069
allele	CA/TG
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10037143	0.84[EUR][1000 genomes]
rs10050512	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10060873	0.86[EUR][1000 genomes]
rs10064990	0.87[EUR][1000 genomes]
rs10073423	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10078494	0.84[EUR][1000 genomes]
rs10079521	0.87[EUR][1000 genomes]
rs10461734	0.86[EUR][1000 genomes]
rs10461735	0.86[EUR][1000 genomes]
rs10461736	0.83[EUR][1000 genomes]
rs10462034	0.82[EUR][1000 genomes]
rs1073273	0.84[EUR][1000 genomes]
rs1110874	0.85[EUR][1000 genomes]
rs11954853	0.88[EUR][1000 genomes]
rs12153093	0.83[EUR][1000 genomes]
rs13189999	0.82[EUR][1000 genomes]
rs1354108	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1501513	0.85[EUR][1000 genomes]
rs1501516	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1501517	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1501518	0.86[EUR][1000 genomes]
rs1501519	0.86[EUR][1000 genomes]
rs1827329	0.86[EUR][1000 genomes]
rs1827330	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1827331	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1875430	0.85[EUR][1000 genomes]
rs1909951	0.87[EUR][1000 genomes]
rs1995351	0.84[EUR][1000 genomes]
rs2134102	0.84[EUR][1000 genomes]
rs35005365	0.82[EUR][1000 genomes]
rs35707555	0.82[EUR][1000 genomes]
rs3885984	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3913458	0.84[EUR][1000 genomes]
rs3913459	0.83[EUR][1000 genomes]
rs4242098	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4305644	0.82[EUR][1000 genomes]
rs4320267	0.81[EUR][1000 genomes]
rs4404722	0.88[EUR][1000 genomes]
rs4457090	0.82[EUR][1000 genomes]
rs4460174	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4489104	0.88[EUR][1000 genomes]
rs4533937	0.88[EUR][1000 genomes]
rs4957203	0.84[EUR][1000 genomes]
rs4957204	0.84[EUR][1000 genomes]
rs58911119	0.84[EUR][1000 genomes]
rs6451592	0.84[EUR][1000 genomes]
rs6451605	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6861819	0.82[EUR][1000 genomes]
rs6872878	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6888449	0.83[EUR][1000 genomes]
rs6890248	0.86[EUR][1000 genomes]
rs7713544	0.84[EUR][1000 genomes]
rs7715104	0.88[EUR][1000 genomes]
rs7715374	0.81[EUR][1000 genomes]
rs7718368	0.88[EUR][1000 genomes]
rs905097	0.85[EUR][1000 genomes]
rs9292843	0.86[EUR][1000 genomes]
rs990898	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933208	chr5:41879946-42876624	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	112 gene(s)	inside rSNPs	diseases
2	nsv492147	chr5:41902086-42896162	Enhancers Flanking Active TSS Active TSS Genic enhancers Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	113 gene(s)	inside rSNPs	diseases
3	nsv1034208	chr5:42119128-42290759	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:42219400-42228600	Weak transcription	Adipose Nuclei	Adipose
2	chr5:42223200-42228400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr5:42224400-42226600	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr5:42224800-42227200	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr5:42225200-42227400	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr5:42225400-42226400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr5:42225400-42228600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr5:42225600-42226800	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr5:42225600-42228600	Weak transcription	H1 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links