Variant report

Variant	rs34035680
Chromosome Location	chr11:65650177-65650178
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:65274736..65277553-chr11:65649720..65652648,2	K562	blood:
2	chr11:65482077..65483919-chr11:65649020..65651069,2	MCF-7	breast:
3	chr11:65478671..65480330-chr11:65648521..65651673,3	MCF-7	breast:
4	chr11:65646632..65650808-chr11:65654844..65660529,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000172500	Chromatin interaction
ENSG00000175602	Chromatin interaction
ENSG00000172977	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1048924	1.00[EUR][1000 genomes]
rs10896054	1.00[EUR][1000 genomes]
rs1151520	1.00[EUR][1000 genomes]
rs12275175	1.00[EUR][1000 genomes]
rs12283972	1.00[EUR][1000 genomes]
rs12294096	1.00[EUR][1000 genomes]
rs12294241	1.00[EUR][1000 genomes]
rs12294549	1.00[EUR][1000 genomes]
rs12721573	1.00[EUR][1000 genomes]
rs1647569	1.00[EUR][1000 genomes]
rs35194319	1.00[EUR][1000 genomes]
rs500667	1.00[EUR][1000 genomes]
rs508328	1.00[EUR][1000 genomes]
rs548709	1.00[EUR][1000 genomes]
rs551115	1.00[EUR][1000 genomes]
rs551986	1.00[EUR][1000 genomes]
rs56663613	1.00[EUR][1000 genomes]
rs56990327	1.00[EUR][1000 genomes]
rs601314	1.00[EUR][1000 genomes]
rs604630	1.00[EUR][1000 genomes]
rs613953	1.00[EUR][1000 genomes]
rs614330	1.00[EUR][1000 genomes]
rs641323	1.00[EUR][1000 genomes]
rs669300	1.00[EUR][1000 genomes]
rs7115662	1.00[EUR][1000 genomes]
rs7124858	1.00[EUR][1000 genomes]
rs73492420	1.00[EUR][1000 genomes]
rs73492424	1.00[EUR][1000 genomes]
rs73492432	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897736	chr11:65335705-65676516	Flanking Active TSS Active TSS Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	227 gene(s)	inside rSNPs	diseases
2	nsv430401	chr11:65419324-65788024	Enhancers Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	224 gene(s)	inside rSNPs	diseases
3	esv2758274	chr11:65559893-65722363	Genic enhancers Active TSS Flanking Active TSS Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	178 gene(s)	inside rSNPs	diseases
4	esv2759834	chr11:65559893-65722363	Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	178 gene(s)	inside rSNPs	diseases
5	nsv427890	chr11:65559893-65722363	Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	178 gene(s)	inside rSNPs	diseases
6	nsv897761	chr11:65580638-65738566	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	186 gene(s)	inside rSNPs	diseases
7	nsv555215	chr11:65581579-65676516	Strong transcription Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	165 gene(s)	inside rSNPs	diseases
8	nsv897762	chr11:65613218-65758854	Active TSS Flanking Active TSS Genic enhancers Enhancers Flanking Bivalent TSS/Enh Strong transcription Weak transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	185 gene(s)	inside rSNPs	diseases
9	nsv897764	chr11:65613348-65695222	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	176 gene(s)	inside rSNPs	diseases
10	nsv897765	chr11:65623708-65758854	Strong transcription Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	178 gene(s)	inside rSNPs	diseases
11	nsv832191	chr11:65632329-65806120	Flanking Active TSS Weak transcription Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
12	nsv530622	chr11:65649068-65661361	Genic enhancers Flanking Active TSS Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	65 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:65641000-65654400	Weak transcription	Fetal Heart	heart
2	chr11:65641400-65650400	Weak transcription	Fetal Kidney	kidney
3	chr11:65641400-65650400	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr11:65641400-65650600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr11:65641400-65651000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr11:65641400-65654000	Weak transcription	Small Intestine	intestine
7	chr11:65641600-65650200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr11:65641600-65650200	Weak transcription	Liver	Liver
9	chr11:65641600-65650400	Weak transcription	Colon Smooth Muscle	Colon
10	chr11:65641600-65651000	Weak transcription	Left Ventricle	heart
11	chr11:65641600-65651000	Weak transcription	Hela-S3	cervix
12	chr11:65641600-65651200	Weak transcription	Psoas Muscle	Psoas
13	chr11:65641600-65655000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr11:65641600-65655000	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr11:65641600-65655000	Weak transcription	Right Atrium	heart
16	chr11:65641800-65651000	Weak transcription	Stomach Mucosa	stomach
17	chr11:65646000-65651000	Weak transcription	K562	blood
18	chr11:65646400-65650200	Weak transcription	HepG2	liver
19	chr11:65647200-65652000	Strong transcription	Fetal Stomach	stomach
20	chr11:65647400-65652000	Strong transcription	Fetal Intestine Small	intestine
21	chr11:65648200-65651200	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr11:65648200-65651800	Strong transcription	Placenta Amnion	Placenta Amnion
23	chr11:65648600-65651600	Strong transcription	Brain Inferior Temporal Lobe	brain
24	chr11:65648600-65651800	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr11:65648600-65652200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr11:65648800-65650200	Weak transcription	Primary B cells from cord blood	blood
27	chr11:65648800-65651200	Strong transcription	Brain Germinal Matrix	brain
28	chr11:65648800-65651200	Weak transcription	HUVEC	blood vessel
29	chr11:65648800-65651800	Strong transcription	Fetal Brain Female	brain
30	chr11:65648800-65651800	Strong transcription	Fetal Muscle Trunk	muscle
31	chr11:65648800-65651800	Strong transcription	NHEK	skin
32	chr11:65648800-65651800	Strong transcription	NHLF	lung
33	chr11:65648800-65652000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr11:65648800-65652200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr11:65648800-65652400	Genic enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr11:65649000-65650200	Weak transcription	Primary hematopoietic stem cells	blood
37	chr11:65649000-65650200	Weak transcription	HSMMtube	muscle
38	chr11:65649000-65650800	Genic enhancers	Primary T cells fromperipheralblood	blood
39	chr11:65649000-65651000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
40	chr11:65649000-65651000	Weak transcription	HMEC	breast
41	chr11:65649000-65651800	Strong transcription	Cortex derived primary cultured neurospheres	brain
42	chr11:65649000-65651800	Strong transcription	Fetal Muscle Leg	muscle
43	chr11:65649000-65652000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr11:65649000-65652000	Strong transcription	Right Ventricle	heart
45	chr11:65649000-65652000	Strong transcription	Skeletal Muscle Male	skeletal muscle
46	chr11:65649000-65652200	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr11:65649000-65653800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr11:65649000-65654400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr11:65649000-65654400	Strong transcription	Placenta	Placenta
50	chr11:65649000-65655000	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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