Variant report

Variant	rs73492432
Chromosome Location	chr11:65538547-65538548
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:65486263..65488228-chr11:65537462..65540195,2	K562	blood:
2	chr11:65537505..65539315-chr11:65661843..65663867,2	MCF-7	breast:
3	chr11:65537232..65538956-chr11:65585286..65587865,2	MCF-7	breast:
4	chr11:65495038..65497128-chr11:65537591..65539830,2	MCF-7	breast:
5	chr11:65534494..65538893-chr11:65617709..65620478,3	K562	blood:
6	chr11:65492577..65494943-chr11:65537184..65539913,2	K562	blood:
7	chr11:65497654..65499600-chr11:65538444..65540594,2	K562	blood:
8	chr11:65536504..65538956-chr11:65583165..65585823,2	K562	blood:
9	chr11:65535765..65538772-chr11:65624238..65628078,4	MCF-7	breast:
10	chr11:65530310..65533560-chr11:65535934..65539165,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000214659	Chromatin interaction
ENSG00000172757	Chromatin interaction
ENSG00000172922	Chromatin interaction
ENSG00000172732	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1048924	1.00[EUR][1000 genomes]
rs1078458	1.00[EUR][1000 genomes]
rs10896054	1.00[EUR][1000 genomes]
rs1151504	1.00[EUR][1000 genomes]
rs1151520	1.00[EUR][1000 genomes]
rs1194099	1.00[EUR][1000 genomes]
rs12275175	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12283972	1.00[EUR][1000 genomes]
rs12294096	1.00[EUR][1000 genomes]
rs12294241	1.00[EUR][1000 genomes]
rs12294549	1.00[EUR][1000 genomes]
rs12721573	1.00[EUR][1000 genomes]
rs1647569	1.00[EUR][1000 genomes]
rs34035680	1.00[EUR][1000 genomes]
rs35194319	1.00[EUR][1000 genomes]
rs500667	1.00[EUR][1000 genomes]
rs508328	1.00[EUR][1000 genomes]
rs548709	1.00[EUR][1000 genomes]
rs551115	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs551986	1.00[EUR][1000 genomes]
rs56663613	1.00[EUR][1000 genomes]
rs56798161	0.81[AFR][1000 genomes]
rs56990327	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs601314	1.00[EUR][1000 genomes]
rs604630	1.00[EUR][1000 genomes]
rs613953	1.00[EUR][1000 genomes]
rs614330	1.00[EUR][1000 genomes]
rs641323	1.00[EUR][1000 genomes]
rs669300	1.00[EUR][1000 genomes]
rs7106444	1.00[EUR][1000 genomes]
rs7107453	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7115662	1.00[EUR][1000 genomes]
rs7124858	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72556578	1.00[EUR][1000 genomes]
rs73492420	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73492424	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7934992	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897718	chr11:65140209-65577516	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1003 gene(s)	inside rSNPs	diseases
2	nsv897736	chr11:65335705-65676516	Flanking Active TSS Active TSS Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	227 gene(s)	inside rSNPs	diseases
3	nsv430401	chr11:65419324-65788024	Enhancers Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	224 gene(s)	inside rSNPs	diseases
4	nsv897758	chr11:65490756-65564035	Flanking Bivalent TSS/Enh Active TSS Weak transcription Genic enhancers Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:65532400-65542200	Weak transcription	A549	lung
2	chr11:65532400-65542600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr11:65532600-65544000	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr11:65533000-65542000	Weak transcription	Fetal Intestine Small	intestine
5	chr11:65533600-65543600	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr11:65534200-65544600	Weak transcription	Osteobl	bone
7	chr11:65534400-65542200	Enhancers	Placenta	Placenta
8	chr11:65534400-65542200	Weak transcription	NHDF-Ad	bronchial
9	chr11:65534400-65543800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr11:65536000-65542200	Weak transcription	Hela-S3	cervix
11	chr11:65536400-65541400	Enhancers	Primary neutrophils fromperipheralblood	blood
12	chr11:65537000-65538800	Enhancers	Primary B cells from cord blood	blood
13	chr11:65537000-65543800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr11:65537200-65538800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr11:65537400-65539000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr11:65537400-65542400	Weak transcription	Adipose Nuclei	Adipose
17	chr11:65537400-65542800	Weak transcription	Duodenum Mucosa	Duodenum
18	chr11:65537400-65543000	Weak transcription	Primary T cells from cord blood	blood
19	chr11:65537400-65544200	Weak transcription	NHLF	lung
20	chr11:65537400-65544400	Weak transcription	Primary T helper cells fromperipheralblood	blood
21	chr11:65537400-65544400	Weak transcription	Dnd41	blood
22	chr11:65537400-65544600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
23	chr11:65537400-65544600	Weak transcription	Colon Smooth Muscle	Colon
24	chr11:65537400-65544600	Weak transcription	Rectal Mucosa Donor 29	rectum
25	chr11:65537400-65544800	Weak transcription	Brain Hippocampus Middle	brain
26	chr11:65537400-65545200	Weak transcription	Primary T helper cells PMA-I stimulated	--
27	chr11:65537400-65546600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
28	chr11:65537400-65546600	Weak transcription	Rectal Smooth Muscle	rectum
29	chr11:65537600-65542400	Weak transcription	Brain Cingulate Gyrus	brain
30	chr11:65537600-65542600	Weak transcription	Primary hematopoietic stem cells	blood
31	chr11:65537600-65544200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr11:65537600-65545000	Weak transcription	Aorta	Aorta
33	chr11:65537600-65546600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
34	chr11:65537800-65539200	Enhancers	Monocytes-CD14+_RO01746	blood
35	chr11:65537800-65541600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr11:65537800-65541800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr11:65537800-65543800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr11:65537800-65543800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr11:65537800-65546800	Weak transcription	K562	blood
40	chr11:65538000-65539400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr11:65538000-65539600	Enhancers	HepG2	liver
42	chr11:65538000-65540400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
43	chr11:65538200-65539000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr11:65538200-65542600	Weak transcription	HMEC	breast

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