Variant report

Variant	rs56798161
Chromosome Location	chr11:65545913-65545914
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:65477209..65479962-chr11:65544503..65546115,2	MCF-7	breast:
2	chr11:65545110..65546921-chr11:65587302..65589568,2	MCF-7	breast:
3	chr11:65477911..65483635-chr11:65545629..65549670,11	K562	blood:
4	chr11:65544951..65562337-chr11:65623093..65630859,34	MCF-7	breast:
5	chr11:65545624..65552162-chr11:65622017..65629334,15	K562	blood:
6	chr11:65545480..65548295-chr11:65624014..65629369,5	MCF-7	breast:
7	chr11:65544303..65548645-chr11:65657766..65659706,5	K562	blood:
8	chr11:65545624..65551607-chr11:65624049..65629334,14	K562	blood:
9	chr11:65487099..65491310-chr11:65543476..65547938,6	MCF-7	breast:
10	chr11:65484089..65489642-chr11:65545405..65550834,8	K562	blood:
11	chr11:65484089..65489445-chr11:65545173..65550834,9	K562	blood:

No data

Variant related genes	Relation type
ENSG00000175602	Chromatin interaction
ENSG00000172757	Chromatin interaction
ENSG00000172922	Chromatin interaction
ENSG00000172977	Chromatin interaction
ENSG00000172732	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12275175	0.88[AFR][1000 genomes]
rs56990327	0.81[AFR][1000 genomes]
rs7107453	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7124858	0.81[AFR][1000 genomes]
rs73492420	0.81[AFR][1000 genomes]
rs73492424	0.81[AFR][1000 genomes]
rs73492432	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897718	chr11:65140209-65577516	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1003 gene(s)	inside rSNPs	diseases
2	nsv897736	chr11:65335705-65676516	Flanking Active TSS Active TSS Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	227 gene(s)	inside rSNPs	diseases
3	nsv430401	chr11:65419324-65788024	Enhancers Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	224 gene(s)	inside rSNPs	diseases
4	nsv897758	chr11:65490756-65564035	Flanking Bivalent TSS/Enh Active TSS Weak transcription Genic enhancers Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
5	nsv897759	chr11:65543827-65554502	Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	26 gene(s)	inside rSNPs	diseases
6	nsv897760	chr11:65545306-65559266	Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:65537400-65546600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
2	chr11:65537400-65546600	Weak transcription	Rectal Smooth Muscle	rectum
3	chr11:65537600-65546600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr11:65537800-65546800	Weak transcription	K562	blood
5	chr11:65539600-65546600	Weak transcription	Stomach Mucosa	stomach
6	chr11:65542000-65546400	Strong transcription	Fetal Intestine Small	intestine
7	chr11:65542200-65546000	Strong transcription	Brain Anterior Caudate	brain
8	chr11:65542200-65546200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr11:65542200-65546600	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr11:65542200-65547000	Strong transcription	A549	lung
11	chr11:65542400-65546200	Strong transcription	Fetal Stomach	stomach
12	chr11:65542400-65546800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr11:65542400-65546800	Weak transcription	Brain Angular Gyrus	brain
14	chr11:65542600-65547000	Weak transcription	Small Intestine	intestine
15	chr11:65542600-65547200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr11:65542800-65546600	Strong transcription	Thymus	Thymus
17	chr11:65543000-65546000	Strong transcription	Primary T cells from cord blood	blood
18	chr11:65543200-65547000	Weak transcription	NHDF-Ad	bronchial
19	chr11:65543200-65547200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr11:65543600-65547000	Strong transcription	Cortex derived primary cultured neurospheres	brain
21	chr11:65543800-65546400	Strong transcription	Right Ventricle	heart
22	chr11:65543800-65546600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr11:65543800-65546600	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr11:65543800-65546600	Weak transcription	Right Atrium	heart
25	chr11:65543800-65546600	Strong transcription	NHEK	skin
26	chr11:65543800-65546800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr11:65543800-65546800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr11:65543800-65546800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr11:65543800-65546800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr11:65543800-65547000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr11:65544000-65546400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
32	chr11:65544000-65546400	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr11:65544000-65546600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
34	chr11:65544000-65546600	Strong transcription	Duodenum Mucosa	Duodenum
35	chr11:65544000-65546800	Strong transcription	Fetal Muscle Trunk	muscle
36	chr11:65544000-65546800	Strong transcription	Rectal Mucosa Donor 31	rectum
37	chr11:65544000-65547200	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
38	chr11:65544200-65546000	Strong transcription	Brain Germinal Matrix	brain
39	chr11:65544200-65546000	Strong transcription	Fetal Thymus	thymus
40	chr11:65544200-65546200	Strong transcription	Duodenum Smooth Muscle	Duodenum
41	chr11:65544200-65546400	Strong transcription	Primary B cells from peripheral blood	blood
42	chr11:65544200-65546600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr11:65544200-65546600	Genic enhancers	Primary mononuclear cells fromperipheralblood	Blood
44	chr11:65544200-65546800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr11:65544200-65546800	Genic enhancers	Adipose Nuclei	Adipose
46	chr11:65544200-65546800	Strong transcription	Fetal Muscle Leg	muscle
47	chr11:65544200-65546800	Genic enhancers	HMEC	breast
48	chr11:65544200-65546800	Strong transcription	NHLF	lung
49	chr11:65544200-65547600	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr11:65544400-65546000	Strong transcription	Primary T helper cells fromperipheralblood	blood

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