Variant report

Variant	rs7107453
Chromosome Location	chr11:65545306-65545307
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:65477209..65479962-chr11:65544503..65546115,2	MCF-7	breast:
2	chr11:65545110..65546921-chr11:65587302..65589568,2	MCF-7	breast:
3	chr11:65543427..65545699-chr11:65553681..65556951,3	K562	blood:
4	chr11:65544951..65562337-chr11:65623093..65630859,34	MCF-7	breast:
5	chr11:65544303..65548645-chr11:65657766..65659706,5	K562	blood:
6	chr11:65487099..65491310-chr11:65543476..65547938,6	MCF-7	breast:
7	chr11:65484089..65489445-chr11:65545173..65550834,9	K562	blood:
8	chr11:65382267..65385019-chr11:65543981..65545607,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000172977	Chromatin interaction
ENSG00000172818	Chromatin interaction
ENSG00000172757	Chromatin interaction
ENSG00000175602	Chromatin interaction
ENSG00000172732	Chromatin interaction
ENSG00000197136	Chromatin interaction
ENSG00000172922	Chromatin interaction
ENSG00000173327	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1151520	1.00[TSI][hapmap]
rs12275175	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs3829939	1.00[TSI][hapmap]
rs551115	0.83[AMR][1000 genomes]
rs551986	1.00[TSI][hapmap]
rs56798161	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs56990327	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs601314	1.00[TSI][hapmap]
rs604630	1.00[TSI][hapmap]
rs641323	1.00[TSI][hapmap]
rs669300	1.00[TSI][hapmap]
rs7124858	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73492420	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73492424	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73492432	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897718	chr11:65140209-65577516	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1003 gene(s)	inside rSNPs	diseases
2	nsv897736	chr11:65335705-65676516	Flanking Active TSS Active TSS Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	227 gene(s)	inside rSNPs	diseases
3	nsv430401	chr11:65419324-65788024	Enhancers Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	224 gene(s)	inside rSNPs	diseases
4	nsv897758	chr11:65490756-65564035	Flanking Bivalent TSS/Enh Active TSS Weak transcription Genic enhancers Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
5	nsv897759	chr11:65543827-65554502	Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	26 gene(s)	inside rSNPs	diseases
6	nsv897760	chr11:65545306-65559266	Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:65537400-65546600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
2	chr11:65537400-65546600	Weak transcription	Rectal Smooth Muscle	rectum
3	chr11:65537600-65546600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr11:65537800-65546800	Weak transcription	K562	blood
5	chr11:65539600-65546600	Weak transcription	Stomach Mucosa	stomach
6	chr11:65540600-65545800	Weak transcription	Brain Substantia Nigra	brain
7	chr11:65542000-65546400	Strong transcription	Fetal Intestine Small	intestine
8	chr11:65542200-65545600	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr11:65542200-65546000	Strong transcription	Brain Anterior Caudate	brain
10	chr11:65542200-65546200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr11:65542200-65546600	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr11:65542200-65547000	Strong transcription	A549	lung
13	chr11:65542400-65545400	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr11:65542400-65545600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr11:65542400-65545800	Strong transcription	Brain Cingulate Gyrus	brain
16	chr11:65542400-65546200	Strong transcription	Fetal Stomach	stomach
17	chr11:65542400-65546800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr11:65542400-65546800	Weak transcription	Brain Angular Gyrus	brain
19	chr11:65542600-65547000	Weak transcription	Small Intestine	intestine
20	chr11:65542600-65547200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr11:65542800-65546600	Strong transcription	Thymus	Thymus
22	chr11:65543000-65546000	Strong transcription	Primary T cells from cord blood	blood
23	chr11:65543200-65545600	Strong transcription	Esophagus	oesophagus
24	chr11:65543200-65547000	Weak transcription	NHDF-Ad	bronchial
25	chr11:65543200-65547200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr11:65543600-65547000	Strong transcription	Cortex derived primary cultured neurospheres	brain
27	chr11:65543800-65545400	Weak transcription	Left Ventricle	heart
28	chr11:65543800-65545800	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
29	chr11:65543800-65545800	Strong transcription	Fetal Intestine Large	intestine
30	chr11:65543800-65546400	Strong transcription	Right Ventricle	heart
31	chr11:65543800-65546600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr11:65543800-65546600	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr11:65543800-65546600	Weak transcription	Right Atrium	heart
34	chr11:65543800-65546600	Strong transcription	NHEK	skin
35	chr11:65543800-65546800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr11:65543800-65546800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
37	chr11:65543800-65546800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr11:65543800-65546800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr11:65543800-65547000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr11:65544000-65546400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
41	chr11:65544000-65546400	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr11:65544000-65546600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
43	chr11:65544000-65546600	Strong transcription	Duodenum Mucosa	Duodenum
44	chr11:65544000-65546800	Strong transcription	Fetal Muscle Trunk	muscle
45	chr11:65544000-65546800	Strong transcription	Rectal Mucosa Donor 31	rectum
46	chr11:65544000-65547200	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
47	chr11:65544200-65546000	Strong transcription	Brain Germinal Matrix	brain
48	chr11:65544200-65546000	Strong transcription	Fetal Thymus	thymus
49	chr11:65544200-65546200	Strong transcription	Duodenum Smooth Muscle	Duodenum
50	chr11:65544200-65546400	Strong transcription	Primary B cells from peripheral blood	blood

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