Variant report

Variant	rs34077466
Chromosome Location	chr9:117575079-117575080
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs13288059	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1833016	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2067583	0.89[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs34187507	0.86[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs34663797	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35097049	0.85[AFR][1000 genomes]
rs35522569	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs36118932	0.93[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs66886483	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7853287	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7860414	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7871089	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831695	chr9:117567626-117726247	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:117568800-117576200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr9:117569800-117582600	Weak transcription	Pancreas	Pancrea
3	chr9:117572800-117576200	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr9:117573200-117577600	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr9:117573600-117575400	Enhancers	Placenta Amnion	Placenta Amnion
6	chr9:117573600-117575600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr9:117573600-117576200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr9:117574000-117575800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr9:117574600-117586400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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