Variant report

Variant	rs36118932
Chromosome Location	chr9:117616367-117616368
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:117615331..117617300-chr9:117620476..117622767,2	MCF-7	breast:
2	chr9:117611299..117613789-chr9:117615464..117617211,2	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs13300483	0.93[EUR][1000 genomes]
rs2067583	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34077466	0.93[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs34187507	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35097049	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35522569	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs66886483	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831695	chr9:117567626-117726247	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:117611600-117618800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr9:117613000-117616600	Enhancers	Stomach Mucosa	stomach
3	chr9:117613400-117617000	Enhancers	Fetal Intestine Large	intestine
4	chr9:117613400-117622600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr9:117613600-117616800	Weak transcription	HUVEC	blood vessel
6	chr9:117614000-117616800	Weak transcription	Gastric	stomach
7	chr9:117614200-117616600	Enhancers	Rectal Mucosa Donor 29	rectum
8	chr9:117614200-117617000	Enhancers	Duodenum Mucosa	Duodenum
9	chr9:117614200-117617400	Enhancers	Fetal Intestine Small	intestine
10	chr9:117614400-117617000	Enhancers	Rectal Mucosa Donor 31	rectum
11	chr9:117614400-117617800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr9:117614400-117618000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr9:117614600-117617400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr9:117614600-117617800	Weak transcription	HSMM	muscle
15	chr9:117614600-117618600	Weak transcription	HSMMtube	muscle
16	chr9:117614600-117618800	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr9:117614800-117617800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr9:117615000-117617600	Weak transcription	NHDF-Ad	bronchial
19	chr9:117615000-117618800	Weak transcription	Fetal Stomach	stomach
20	chr9:117615600-117616800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
21	chr9:117615600-117616800	Weak transcription	Small Intestine	intestine
22	chr9:117615600-117617400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr9:117615600-117617400	Weak transcription	Adipose Nuclei	Adipose
24	chr9:117615600-117617400	Weak transcription	Osteobl	bone
25	chr9:117615600-117617600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr9:117615600-117617800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr9:117615600-117617800	Weak transcription	NHLF	lung
28	chr9:117615800-117616800	Weak transcription	Primary monocytes fromperipheralblood	blood
29	chr9:117615800-117617400	Weak transcription	Muscle Satellite Cultured Cells	--
30	chr9:117615800-117617400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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