Variant report

Variant	rs34077973
Chromosome Location	chr4:57916459-57916460
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12642511	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12642538	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13145672	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6839014	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868815	chr4:57114268-58084688	Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	88 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:57898800-57917800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr4:57899400-57925000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr4:57899600-57942200	Weak transcription	Primary hematopoietic stem cells	blood
4	chr4:57904800-57922200	Weak transcription	Brain Cingulate Gyrus	brain
5	chr4:57907400-57916600	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr4:57910400-57917200	Weak transcription	Rectal Smooth Muscle	rectum
7	chr4:57910400-57921200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr4:57911600-57917200	Weak transcription	Stomach Smooth Muscle	stomach
9	chr4:57911600-57917400	Weak transcription	Fetal Muscle Leg	muscle
10	chr4:57911800-57919600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr4:57912000-57920200	Weak transcription	Aorta	Aorta
12	chr4:57912600-57916600	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr4:57913000-57921200	Weak transcription	Fetal Stomach	stomach
14	chr4:57913000-57922000	Weak transcription	NHLF	lung
15	chr4:57913000-57922600	Weak transcription	Ovary	ovary
16	chr4:57914000-57919600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr4:57914200-57918000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr4:57914600-57916600	Enhancers	HSMMtube	muscle
19	chr4:57914600-57918000	Enhancers	HUVEC	blood vessel
20	chr4:57914800-57916800	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr4:57915000-57916800	Weak transcription	Right Atrium	heart
22	chr4:57915000-57918400	Enhancers	Skeletal Muscle Male	skeletal muscle
23	chr4:57915000-57921200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr4:57915200-57922400	Weak transcription	Brain Hippocampus Middle	brain
25	chr4:57915400-57917000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr4:57915400-57917400	Weak transcription	NHDF-Ad	bronchial
27	chr4:57915400-57923600	Weak transcription	HSMM	muscle
28	chr4:57915600-57922600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr4:57915600-57923000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
30	chr4:57915600-57924200	Enhancers	Left Ventricle	heart
31	chr4:57915800-57916600	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr4:57915800-57917200	Weak transcription	Colon Smooth Muscle	Colon
33	chr4:57915800-57917200	Weak transcription	Fetal Heart	heart
34	chr4:57915800-57930200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr4:57916000-57917400	Weak transcription	Psoas Muscle	Psoas
36	chr4:57916000-57917400	Weak transcription	Spleen	Spleen
37	chr4:57916000-57918000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr4:57916000-57918400	Weak transcription	Muscle Satellite Cultured Cells	--
39	chr4:57916000-57919400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr4:57916000-57919400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr4:57916000-57919400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr4:57916000-57919400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr4:57916000-57919400	Weak transcription	HMEC	breast
44	chr4:57916000-57919600	Weak transcription	A549	lung
45	chr4:57916000-57922000	Weak transcription	Brain Anterior Caudate	brain
46	chr4:57916200-57916600	Weak transcription	Osteobl	bone
47	chr4:57916200-57917000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr4:57916200-57917200	Weak transcription	Adipose Nuclei	Adipose
49	chr4:57916200-57917200	Weak transcription	Fetal Kidney	kidney
50	chr4:57916200-57917400	Weak transcription	Right Ventricle	heart

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