Variant report

Variant	rs6839014
Chromosome Location	chr4:57911929-57911930
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12642511	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12642538	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13145672	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34077973	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868815	chr4:57114268-58084688	Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	88 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:57898800-57917800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr4:57899200-57914600	Weak transcription	Brain Substantia Nigra	brain
3	chr4:57899400-57925000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr4:57899600-57913000	Weak transcription	Fetal Intestine Small	intestine
5	chr4:57899600-57942200	Weak transcription	Primary hematopoietic stem cells	blood
6	chr4:57904800-57912200	Weak transcription	Brain Angular Gyrus	brain
7	chr4:57904800-57922200	Weak transcription	Brain Cingulate Gyrus	brain
8	chr4:57907000-57914800	Weak transcription	Fetal Heart	heart
9	chr4:57907200-57913400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr4:57907400-57916600	Weak transcription	Monocytes-CD14+_RO01746	blood
11	chr4:57908000-57912600	Enhancers	NHDF-Ad	bronchial
12	chr4:57908000-57913000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr4:57908000-57914200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr4:57908200-57913000	Enhancers	NHLF	lung
15	chr4:57908400-57913000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr4:57908400-57913000	Enhancers	Fetal Stomach	stomach
17	chr4:57908800-57913000	Enhancers	Colon Smooth Muscle	Colon
18	chr4:57909000-57912800	Enhancers	Osteobl	bone
19	chr4:57909200-57912000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr4:57909200-57912400	Enhancers	HSMM	muscle
21	chr4:57909600-57913600	Enhancers	HSMMtube	muscle
22	chr4:57909800-57912000	Enhancers	Aorta	Aorta
23	chr4:57909800-57912000	Enhancers	HMEC	breast
24	chr4:57910000-57912800	Enhancers	Duodenum Smooth Muscle	Duodenum
25	chr4:57910400-57912800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr4:57910400-57913400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr4:57910400-57914800	Weak transcription	Brain Hippocampus Middle	brain
28	chr4:57910400-57915000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr4:57910400-57915000	Weak transcription	Spleen	Spleen
30	chr4:57910400-57917200	Weak transcription	Rectal Smooth Muscle	rectum
31	chr4:57910400-57921200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr4:57910600-57912400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
33	chr4:57910600-57912400	Weak transcription	Right Ventricle	heart
34	chr4:57910600-57912800	Weak transcription	Right Atrium	heart
35	chr4:57910600-57914800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr4:57911000-57912400	Weak transcription	Skeletal Muscle Male	skeletal muscle
37	chr4:57911000-57912600	Enhancers	Skeletal Muscle Female	skeletal muscle
38	chr4:57911200-57912800	Weak transcription	Left Ventricle	heart
39	chr4:57911400-57912600	Weak transcription	Fetal Lung	lung
40	chr4:57911400-57912800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr4:57911400-57913000	Weak transcription	Fetal Kidney	kidney
42	chr4:57911400-57915200	Weak transcription	Brain Anterior Caudate	brain
43	chr4:57911600-57912000	Weak transcription	Ovary	ovary
44	chr4:57911600-57912200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr4:57911600-57914600	Weak transcription	HUVEC	blood vessel
46	chr4:57911600-57917200	Weak transcription	Stomach Smooth Muscle	stomach
47	chr4:57911600-57917400	Weak transcription	Fetal Muscle Leg	muscle
48	chr4:57911800-57912400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr4:57911800-57912400	Weak transcription	Psoas Muscle	Psoas
50	chr4:57911800-57912400	Enhancers	NH-A	brain

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