Variant report

Variant	rs34087937
Chromosome Location	chr11:67150107-67150108
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:28)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:28 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:67057718..67059393-chr11:67149034..67151611,2	MCF-7	breast:
2	chr11:67141366..67142285-chr11:67149775..67150404,2	K562	blood:
3	chr11:67074371..67076083-chr11:67149111..67150718,3	MCF-7	breast:
4	chr11:67083205..67091159-chr11:67142322..67150295,9	MCF-7	breast:
5	chr11:67149260..67151917-chr11:67157586..67159267,3	K562	blood:
6	chr11:66849051..66849672-chr11:67149762..67150603,5	K562	blood:
7	chr11:67034204..67036832-chr11:67149310..67150898,2	MCF-7	breast:
8	chr11:67044869..67046956-chr11:67148887..67151859,2	K562	blood:
9	chr11:67117727..67123656-chr11:67146107..67152215,12	K562	blood:
10	chr11:67112957..67114004-chr11:67149652..67150619,6	MCF-7	breast:
11	chr11:67138692..67139585-chr11:67149707..67150561,3	MCF-7	breast:
12	chr11:67118736..67119316-chr11:67149751..67150333,3	K562	blood:
13	chr11:67149008..67150613-chr17:19656460..19658061,2	MCF-7	breast:
14	chr11:67078742..67080478-chr11:67147614..67150583,2	MCF-7	breast:
15	chr11:67124072..67125007-chr11:67149714..67150711,18	K562	blood:
16	chr11:67083785..67086299-chr11:67148682..67150944,2	MCF-7	breast:
17	chr11:67118410..67119365-chr11:67149709..67150673,6	MCF-7	breast:
18	chr11:67148597..67151110-chr11:67271222..67275418,3	K562	blood:
19	chr11:67149260..67151684-chr11:67155288..67159086,4	K562	blood:
20	chr11:67139479..67140053-chr11:67149261..67150255,2	K562	blood:
21	chr11:67124274..67125009-chr11:67149771..67150625,3	MCF-7	breast:
22	chr11:67149991..67150638-chr2:92305761..92306280,2	MCF-7	breast:
23	chr11:67029693..67030356-chr11:67150002..67150675,3	MCF-7	breast:
24	chr11:67020033..67020768-chr11:67149733..67150316,2	MCF-7	breast:
25	chr11:67138591..67140616-chr11:67149692..67150721,9	MCF-7	breast:
26	chr11:67118383..67119258-chr11:67149650..67150647,5	MCF-7	breast:
27	chr11:67032807..67039777-chr11:67144727..67150865,7	MCF-7	breast:
28	chr11:67124173..67125081-chr11:67149279..67150894,12	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000172932	Chromatin interaction
ENSG00000172830	Chromatin interaction
ENSG00000175482	Chromatin interaction
ENSG00000110697	Chromatin interaction
ENSG00000172613	Chromatin interaction
ENSG00000175505	Chromatin interaction
ENSG00000173020	Chromatin interaction

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10736657	0.81[ASN][1000 genomes]
rs10896166	0.90[ASN][1000 genomes]
rs10896172	1.00[GIH][hapmap];1.00[MEX][hapmap]
rs12288048	1.00[CHB][hapmap];0.82[CHD][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap]
rs12788405	0.89[EUR][1000 genomes]
rs12791853	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[CHD][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12805811	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1419861	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1558257	1.00[GIH][hapmap];0.82[JPT][hapmap];1.00[MEX][hapmap]
rs1638569	0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17878756	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17883741	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1790731	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1790735	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs1790737	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1790738	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1790739	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1790762	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1894112	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1944096	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2066496	0.86[MEX][hapmap]
rs2286619	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2286620	0.85[MEX][hapmap]
rs2298815	0.88[CHB][hapmap];0.82[CHD][hapmap];0.82[JPT][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2429459	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2429463	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2511057	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2514257	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2532605	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2852875	0.87[ASN][1000 genomes]
rs34000912	0.83[ASN][1000 genomes]
rs35176549	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35821109	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35876769	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3737460	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[CHD][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4244822	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4930197	1.00[GIH][hapmap]
rs61734600	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6591241	0.83[ASN][1000 genomes]
rs66466718	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs71457775	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7394531	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7934433	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs867193	0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9326373	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9734588	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531397	chr11:66653381-67465721	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases
2	nsv933183	chr11:67008447-67160993	Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
3	nsv897796	chr11:67021518-67186000	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	103 gene(s)	inside rSNPs	diseases
4	nsv897797	chr11:67023040-67293234	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	206 gene(s)	inside rSNPs	diseases
5	nsv1043037	chr11:67027193-67357425	Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
6	nsv468603	chr11:67033076-67164495	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
7	nsv555253	chr11:67033076-67164495	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
8	nsv897801	chr11:67033076-67432479	Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	236 gene(s)	inside rSNPs	diseases
9	nsv1047890	chr11:67058231-67184436	Flanking Active TSS Enhancers Strong transcription Genic enhancers Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
10	nsv1048230	chr11:67058231-67252397	Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	146 gene(s)	inside rSNPs	diseases
11	nsv897804	chr11:67090571-67224278	Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	103 gene(s)	inside rSNPs	diseases
12	nsv1039205	chr11:67135246-67252397	Enhancers Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	122 gene(s)	inside rSNPs	diseases
13	esv1818769	chr11:67138811-67300457	Flanking Active TSS Active TSS Genic enhancers Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	167 gene(s)	inside rSNPs	diseases
14	esv1798859	chr11:67139954-67272983	Active TSS Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	154 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:67141800-67152200	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr11:67143200-67152000	Weak transcription	HSMMtube	muscle
3	chr11:67143800-67152200	Weak transcription	Brain Anterior Caudate	brain
4	chr11:67144600-67150200	Enhancers	Placenta Amnion	Placenta Amnion
5	chr11:67145200-67158400	Weak transcription	Right Atrium	heart
6	chr11:67145400-67152200	Weak transcription	Pancreas	Pancrea
7	chr11:67146000-67150200	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr11:67146000-67150200	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr11:67146000-67150200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr11:67146400-67150200	Enhancers	Rectal Mucosa Donor 31	rectum
11	chr11:67146600-67150200	Enhancers	Stomach Mucosa	stomach
12	chr11:67147000-67154400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr11:67147200-67150400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr11:67147200-67158600	Weak transcription	Lung	lung
15	chr11:67147400-67150600	Enhancers	A549	lung
16	chr11:67147400-67152200	Weak transcription	NHLF	lung
17	chr11:67147400-67152400	Weak transcription	Brain Hippocampus Middle	brain
18	chr11:67147400-67158200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr11:67147600-67150200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr11:67147600-67150600	Enhancers	Hela-S3	cervix
21	chr11:67147600-67150600	Enhancers	K562	blood
22	chr11:67147600-67152000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr11:67147600-67152000	Weak transcription	NH-A	brain
24	chr11:67147600-67156800	Weak transcription	Fetal Intestine Small	intestine
25	chr11:67148000-67150200	Enhancers	Primary B cells from cord blood	blood
26	chr11:67148000-67150400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
27	chr11:67148200-67150200	Enhancers	Primary hematopoietic stem cells	blood
28	chr11:67148200-67150200	Enhancers	Fetal Thymus	thymus
29	chr11:67148200-67150200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
30	chr11:67148400-67150200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr11:67148600-67150200	Enhancers	Placenta	Placenta
32	chr11:67148600-67151200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr11:67148600-67152000	Weak transcription	HSMM	muscle
34	chr11:67148800-67150200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr11:67148800-67150200	Bivalent Enhancer	HepG2	liver
36	chr11:67149000-67156600	Weak transcription	Colonic Mucosa	Colon
37	chr11:67149200-67150200	Enhancers	Adipose Nuclei	Adipose
38	chr11:67149200-67150200	Bivalent Enhancer	Fetal Muscle Leg	muscle
39	chr11:67149200-67150200	Enhancers	Spleen	Spleen
40	chr11:67149200-67150400	Enhancers	Duodenum Mucosa	Duodenum
41	chr11:67149200-67150600	Enhancers	Breast Myoepithelial Primary Cells	Breast
42	chr11:67149200-67150600	Enhancers	Primary B cells from peripheral blood	blood
43	chr11:67149200-67150600	Enhancers	Stomach Smooth Muscle	stomach
44	chr11:67149400-67150200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr11:67149400-67150200	Enhancers	Fetal Muscle Trunk	muscle
46	chr11:67149400-67150200	Enhancers	GM12878-XiMat	blood
47	chr11:67149800-67150200	Enhancers	ES-I3 Cell Line	embryonic stem cell
48	chr11:67149800-67150200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr11:67149800-67150200	Enhancers	Primary T helper naive cells from peripheral blood	blood
50	chr11:67149800-67150200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood

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