Variant report

Variant	rs34094119
Chromosome Location	chr8:10935898-10935899
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10099881	0.84[ASN][1000 genomes]
rs10105315	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10108304	0.84[ASN][1000 genomes]
rs10108618	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10113735	0.84[ASN][1000 genomes]
rs10113808	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11773990	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11991118	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11991121	0.84[ASN][1000 genomes]
rs12542383	0.84[ASN][1000 genomes]
rs17723229	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2409689	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2409691	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs28510951	0.84[ASN][1000 genomes]
rs28722721	0.80[AMR][1000 genomes]
rs2898256	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2898257	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2898258	0.84[ASN][1000 genomes]
rs2898260	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4262293	0.84[ASN][1000 genomes]
rs4840542	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4841489	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4841490	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55676920	0.84[ASN][1000 genomes]
rs55813668	0.84[ASN][1000 genomes]
rs59724806	0.84[ASN][1000 genomes]
rs60134032	0.84[ASN][1000 genomes]
rs6601559	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6601560	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs66475020	0.84[ASN][1000 genomes]
rs6980856	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6999969	0.84[ASN][1000 genomes]
rs7014291	0.84[ASN][1000 genomes]
rs7017567	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7463505	0.84[ASN][1000 genomes]
rs7820860	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7835318	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9329235	0.84[ASN][1000 genomes]
rs9657519	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035072	chr8:10819444-11480692	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv539473	chr8:10819444-11480692	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs34094119	C8orf5	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:10925000-10941800	Weak transcription	Right Atrium	heart
2	chr8:10925600-10944400	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr8:10930200-10936000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr8:10932000-10939800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr8:10932200-10936400	Weak transcription	HMEC	breast
6	chr8:10934800-10936200	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr8:10935200-10936000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr8:10935200-10943800	Weak transcription	Brain Anterior Caudate	brain
9	chr8:10935600-10939800	Weak transcription	Brain Inferior Temporal Lobe	brain

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