Variant report

Variant	rs34104724
Chromosome Location	chr11:66851952-66851953
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11820615	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11822387	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11822467	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11825309	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11826883	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11827163	1.00[AMR][1000 genomes]
rs17148068	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2229537	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56072324	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60790887	1.00[AMR][1000 genomes]
rs61731782	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61759808	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7931772	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7949844	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531397	chr11:66653381-67465721	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases
2	nsv532287	chr11:66784014-67023899	Weak transcription Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:66849600-66852000	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr11:66850800-66866000	Weak transcription	Right Atrium	heart
3	chr11:66851600-66862200	Weak transcription	A549	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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