Variant report

Variant	rs60790887
Chromosome Location	chr11:66825317-66825318
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:14)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:14 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:66820676..66825699-chr11:67004753..67010986,10	MCF-7	breast:
2	chr11:66786143..66803039-chr11:66815769..66832347,160	MCF-7	breast:
3	chr11:66786222..66802522-chr11:66819452..66831805,83	MCF-7	breast:
4	chr11:66821404..66826403-chr11:66884710..66889541,16	MCF-7	breast:
5	chr11:66821897..66826528-chr11:67139094..67144065,11	MCF-7	breast:
6	chr11:66486470..66489993-chr11:66822939..66825997,4	MCF-7	breast:
7	chr11:66761490..66778711-chr11:66821814..66832221,36	MCF-7	breast:
8	chr11:66820570..66825355-chr11:67030338..67035766,7	MCF-7	breast:
9	chr11:66742629..66745347-chr11:66824215..66826383,2	MCF-7	breast:
10	chr11:66823856..66826117-chr11:67119023..67120687,3	MCF-7	breast:
11	chr11:66760073..66763994-chr11:66824308..66826043,3	MCF-7	breast:
12	chr11:66825035..66827853-chr11:67026247..67029023,2	MCF-7	breast:
13	chr11:66823467..66825638-chr11:67011327..67013483,2	MCF-7	breast:
14	chr11:66821625..66825972-chr11:66885437..66888104,7	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000173898	Chromatin interaction
ENSG00000173237	Chromatin interaction
ENSG00000252709	Chromatin interaction
ENSG00000175482	Chromatin interaction
ENSG00000173120	Chromatin interaction
ENSG00000173020	Chromatin interaction
ENSG00000173227	Chromatin interaction
ENSG00000256514	Chromatin interaction
ENSG00000175505	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11820615	1.00[AMR][1000 genomes]
rs11825309	1.00[AMR][1000 genomes]
rs11826883	1.00[AMR][1000 genomes]
rs11827163	1.00[AMR][1000 genomes]
rs17148068	1.00[AMR][1000 genomes]
rs2229537	1.00[AMR][1000 genomes]
rs34104724	1.00[AMR][1000 genomes]
rs56072324	1.00[AMR][1000 genomes]
rs61731782	1.00[AMR][1000 genomes]
rs61759808	1.00[AMR][1000 genomes]
rs7931772	1.00[AMR][1000 genomes]
rs7949844	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv555226	chr11:66579572-66845362	Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
2	nsv531397	chr11:66653381-67465721	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases
3	esv1817552	chr11:66751014-66839985	Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	23 gene(s)	inside rSNPs	diseases
4	nsv532287	chr11:66784014-67023899	Weak transcription Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:66823000-66825400	Flanking Active TSS	Stomach Smooth Muscle	stomach
2	chr11:66823200-66825400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr11:66823600-66825400	Flanking Active TSS	Pancreas	Pancrea
4	chr11:66823800-66826200	Weak transcription	K562	blood
5	chr11:66824000-66825600	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr11:66824400-66825400	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr11:66824400-66825400	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr11:66824400-66825400	Flanking Bivalent TSS/Enh	Skeletal Muscle Male	skeletal muscle
9	chr11:66824600-66825400	Transcr. at gene 5' and 3'	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr11:66824600-66825400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr11:66824600-66825400	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
12	chr11:66824600-66825400	Flanking Active TSS	Placenta Amnion	Placenta Amnion
13	chr11:66824600-66825400	Flanking Active TSS	Hela-S3	cervix
14	chr11:66824600-66825400	Flanking Active TSS	HMEC	breast
15	chr11:66824600-66825600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr11:66824600-66825600	Flanking Active TSS	Placenta	Placenta
17	chr11:66824800-66825400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
18	chr11:66824800-66825400	Bivalent/Poised TSS	Colonic Mucosa	Colon
19	chr11:66824800-66825600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr11:66824800-66827800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr11:66825000-66825400	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
22	chr11:66825000-66825400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr11:66825000-66825400	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr11:66825000-66825400	Bivalent Enhancer	Brain Cingulate Gyrus	brain
25	chr11:66825000-66825400	Bivalent Enhancer	Brain Hippocampus Middle	brain
26	chr11:66825000-66825400	Enhancers	Brain Substantia Nigra	brain
27	chr11:66825000-66825400	Flanking Active TSS	Esophagus	oesophagus
28	chr11:66825000-66825400	Bivalent Enhancer	Fetal Stomach	stomach
29	chr11:66825000-66825400	Flanking Active TSS	NHEK	skin
30	chr11:66825000-66825600	Enhancers	Fetal Heart	heart
31	chr11:66825000-66825600	Enhancers	Right Atrium	heart
32	chr11:66825000-66828400	Enhancers	Left Ventricle	heart
33	chr11:66825000-66829600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
34	chr11:66825200-66825400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr11:66825200-66825400	Enhancers	HUES6 Cell Line	embryonic stem cell
36	chr11:66825200-66825400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr11:66825200-66825400	Enhancers	Adipose Nuclei	Adipose
38	chr11:66825200-66825400	Flanking Active TSS	Liver	Liver
39	chr11:66825200-66825400	Enhancers	Duodenum Mucosa	Duodenum
40	chr11:66825200-66825400	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
41	chr11:66825200-66825400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
42	chr11:66825200-66825400	Enhancers	Lung	lung
43	chr11:66825200-66825400	Enhancers	Ovary	ovary
44	chr11:66825200-66825400	Flanking Active TSS	Right Ventricle	heart
45	chr11:66825200-66825400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
46	chr11:66825200-66825400	Active TSS	Osteobl	bone
47	chr11:66825200-66825600	Enhancers	Fetal Intestine Large	intestine
48	chr11:66825200-66825600	Enhancers	Fetal Muscle Leg	muscle
49	chr11:66825200-66825600	Enhancers	Gastric	stomach
50	chr11:66825200-66825600	Enhancers	Stomach Mucosa	stomach

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